Browse Element(s) Details


Os.28429.1.S1_at

Description gb:AK070342.1
DB_XREF= gi:32980366
TID=Os.28429.1
CNT=21
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.28429 (NCBI UniGene Cluster)
UG_TITLE=MRNA for RPM1 like protein, partial cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023051A21, full insert sequence.
FL= gb:AK066251.1 gb:AK070342.1 gb:AK065092.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3316011/11NB-ARC domain containing protein, expressed
LOC_Os12g367209/11NB-ARC domain containing protein, expressed
LOC_Os12g367306/11NB-ARC domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g33110OsAffx.32000.1.S1_at10/1112+20011516..20012263hypothetical protein
LOC_Os12g33120Os.12120.1.S1_at11/1112+20013727..20014553expressed protein
LOC_Os12g33130Os.5390.1.S1_at10/1112+20017000..20017755expressed protein
LOC_Os12g33140OsAffx.32001.1.S1_at11/1112+20023809..20024456hypothetical protein
LOC_Os12g33150NANA12+20029724..20030981expressed protein
LOC_Os12g33160Os.38756.1.S1_s_at11/1112+20033006..20038366NB-ARC domain containing protein, expressed
LOC_Os12g33160Os.28429.1.S1_at11/1112+20033006..20038366NB-ARC domain containing protein, expressed
LOC_Os12g33160Os.28429.2.S1_x_at10/1112+20033006..20038366NB-ARC domain containing protein, expressed
LOC_Os12g33160Os.28429.1.S2_at10/1112+20033006..20038366NB-ARC domain containing protein, expressed
LOC_Os12g33160Os.28429.3.S1_x_at10/1112+20033006..20038366NB-ARC domain containing protein, expressed
LOC_Os12g33160Os.28429.2.S1_at8/1112+20033006..20038366NB-ARC domain containing protein, expressed
LOC_Os12g33160Os.39045.1.S1_x_at1/1112+20033006..20038366NB-ARC domain containing protein, expressed
LOC_Os12g33170Os.40855.2.S1_x_at10/1112+20045351..20046727hypothetical protein
LOC_Os12g33170Os.40855.4.S1_x_at4/1112+20045351..20046727hypothetical protein
LOC_Os12g33170Os.40855.4.S1_at1/1112+20045351..20046727hypothetical protein
LOC_Os12g33170Os.40360.1.S1_x_at1/1112+20045351..20046727hypothetical protein
LOC_Os12g33180Os.40053.1.A1_at11/1112+20047867..20050592expressed protein
LOC_Os12g33180OsAffx.19992.2.S1_at11/1112+20047867..20050592expressed protein
LOC_Os12g33180OsAffx.19992.1.S1_s_at7/1112+20047867..20050592expressed protein
LOC_Os12g33194Os.48076.1.S1_at5/1112+20052043..20054979expressed protein
LOC_Os12g33210Os.50509.1.S1_at11/1112+20055654..20059554F-box domain containing protein, expressed
LOC_Os12g33210Os.50509.1.S2_at11/1112+20055654..20059554F-box domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009613biological_processresponse to pest, pathogen or parasite
GO:0009626biological_processhypersensitive response
GO:0019897cellular_componentextrinsic to plasma membrane
GO:0000166molecular_functionnucleotide binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.28429.1.S1_at--678--6132Chr12:22455922..22455946 (25 bp)
GAGGTGCACGTAAACCAAGTTCTTT
LOC_Os12g36720
Os.28429.1.S1_at--269--2393Chr12:22455851..22455875 (25 bp)
AAACTGTTGCGGCTATATGCTGGCA
LOC_Os12g36720
Os.28429.1.S1_at--1088--10173Chr12:22465922..22465946 (25 bp)
TATATGCTGGCAGAGTGAAGCTGGC
LOC_Os12g36730
Os.28429.1.S1_at--95--8732Chr12:22455771..22455795 (25 bp)
TGTAATAGAAGCTACCCGAAAGGTA
LOC_Os12g36720
Os.28429.1.S1_at--504--2072Chr12:22455683..22455707 (25 bp)
ACATTTGAGTTAAAGGAATCCATTC
LOC_Os12g36720
Os.28429.1.S1_at--305--10693Chr12:22465716..22465740 (25 bp)
TTGCAAGACCTAGATTTGAGAAATA
LOC_Os12g36730
Os.28429.1.S1_at--261--193Chr12:22465544..22465568 (25 bp)
ATTTCGAATATCTCCAGTCTGACCA
LOC_Os12g36730
Os.28429.1.S1_at--599--9573Chr12:22465492..22465516 (25 bp)
TCTTCGCTTTCTCAGGCTACAGTTA
LOC_Os12g36730
Os.28429.1.S1_at--187--7753Chr12:22465478..22465502 (25 bp)
GGCTACAGTTAGCATTTGTTTCGGA
LOC_Os12g36730
Os.28429.1.S1_at--285--4951Chr12:20034872..20034896 (25 bp)
GCATTTGTTTCGGAACAACTACAGG
LOC_Os12g33160
Os.28429.1.S1_at--349--5511Chr12:20034860..20034884 (25 bp)
GAACAACTACAGGAAAAGCTCACTA
LOC_Os12g33160
Target Sequence 
GAGGTGCACGTAAACCAAGTTCTTTTAAATCTCATAAGGTACTGTTTCCAATGTCTTTTGCCAAACTAAGGAAACTGTTG
CGGCTATATGCTGGCAGAGTGAAGCTGGCNCAAGGTCTGATGCTGGGGNATATGAAATCTTTACAGGAGCTTGTAATAGA
AGCTACCCGAAAGGTAATAAAAGAGATTGGNAATTTGACNGAGCTAAGGACTCTTAGGATCGTTTTCNGTAGTGAAAAAA
CATTTGAGTTAAAGGAATCCATTCAAACGTCTATACAAAGGNTCACCAATTTGCAAGACCTAGATTTGAGAAATAATANT
AGTTTTGAAGAAATCATAGACATGCAACAGGTTCCTTCNGGTCTCCAAAGGTTGTTCATGCNCNATTCGTNTATGAAAGC
ATTCCCATGTTGGATCAATTCNTNGATGCTCTCCCNCCTCACCACCTTATCCATTTGNCTGNATTTCGAATATCTCCAGT
CTGACCACCTTGATCGCCTCGCTGAGCTTCCATCTCTTCGCTTTCTCAGGCTACAGTTAGCATTTGTTTCGGAACAACTA
CAGGAAAAGCTCACTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.28429.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis