Browse Element(s) Details


Os.5390.1.S1_at

Description gb:CB966669
DB_XREF= gi:30228779
DB_XREF=NL41_B01
CLONE=NL41_B01
TID=Os.5390.1
CNT=8
FEA=EST
TIER=ConsEnd
STK=2
UG=Os.5390 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3313010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g33090OsAffx.31999.2.S1_at11/1112+19990275..19992189Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os12g33100Os.27776.1.S1_at11/1112+20000190..20004313guanylate kinase, putative, expressed
LOC_Os12g33110OsAffx.32000.1.S1_at10/1112+20011516..20012263hypothetical protein
LOC_Os12g33120Os.12120.1.S1_at11/1112+20013727..20014553expressed protein
LOC_Os12g33130Os.5390.1.S1_at10/1112+20017000..20017755expressed protein
LOC_Os12g33140OsAffx.32001.1.S1_at11/1112+20023809..20024456hypothetical protein
LOC_Os12g33150NANA12+20029724..20030981expressed protein
LOC_Os12g33160Os.38756.1.S1_s_at11/1112+20033006..20038366NB-ARC domain containing protein, expressed
LOC_Os12g33160Os.28429.1.S1_at11/1112+20033006..20038366NB-ARC domain containing protein, expressed
LOC_Os12g33160Os.28429.2.S1_x_at10/1112+20033006..20038366NB-ARC domain containing protein, expressed
LOC_Os12g33160Os.28429.1.S2_at10/1112+20033006..20038366NB-ARC domain containing protein, expressed
LOC_Os12g33160Os.28429.3.S1_x_at10/1112+20033006..20038366NB-ARC domain containing protein, expressed
LOC_Os12g33160Os.28429.2.S1_at8/1112+20033006..20038366NB-ARC domain containing protein, expressed
LOC_Os12g33160Os.39045.1.S1_x_at1/1112+20033006..20038366NB-ARC domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5390.1.S1_at--320--9751Chr12:20017065..20017089 (25 bp)
TAATTAACCATGTCTCGCAACGGGA
LOC_Os12g33130
Os.5390.1.S1_at--627--8071Chr12:20017087..20017111 (25 bp)
GGAGCAGTGTTATGATCAGTCCTGT
LOC_Os12g33130
Os.5390.1.S1_at--619--7251Chr12:20017105..20017129 (25 bp)
GTCCTGTGGTGCAAGGCAAGTTCCA
LOC_Os12g33130
Os.5390.1.S1_at--762--5031Chr12:20017272..20017294 (23 bp)
GCAGAACCGTGACATTGGCAACAGT
LOC_Os12g33130
Os.5390.1.S1_at--499--10631Chr12:20017284..20017308 (25 bp)
TTGGCAACAGTACAAGTGTCCCTGT
LOC_Os12g33130
Os.5390.1.S1_at--513--1391NONE
AGCTCCGGAGGTTCCAAGTTACTCT
NONE
Os.5390.1.S1_at--1077--2811Chr12:20017507..20017531 (25 bp)
AAGTTACTCTATTACAGGCATCGGA
LOC_Os12g33130
Os.5390.1.S1_at--405--4611Chr12:20017538..20017562 (25 bp)
GCGACCTTTTAAGTGCTGGCATACA
LOC_Os12g33130
Os.5390.1.S1_at--519--9851Chr12:20017559..20017583 (25 bp)
TACAACGCCAGGAGGGCTACACCAA
LOC_Os12g33130
Os.5390.1.S1_at--1121--3431Chr12:20017641..20017665 (25 bp)
CATGGGCCTAGCTGGTAGTAAGCTT
LOC_Os12g33130
Os.5390.1.S1_at--1154--7051Chr12:20017658..20017680 (23 bp)
GTAAGCTTAAATGGCCTGCTAATTG
LOC_Os12g33130
Target Sequence 
TAATTAACCATGTCTCGCAACGGGAGCAGTGTTATGATCAGTCCTGTGGTGCAAGGCAAGTTCCAGCANGGCATCATGAA
CGGCATGCAGAACCGTGACATTGGCAACAGTACAAGTGTCCCTGTGTCTGGCTCCAGCTTCAATGGCACTTCCTTCCTCA
GTGGTAACTCCGTNAATGCACCACCAGCTCCGGAGGTTCCAAGTTACTCTATTACAGGCATCGGAGGAGATGCGACCTTT
TAAGTGCTGGCATACAACGCCAGGAGGGCTACACCAAAATAAAACCGCTTAACAGCGTGTTGTAATAATCCTATATCCAT
GAGATTGAATAAATCATGGGCCTAGCTGGTAGTAAGCTTAAATGGCCTGCTAATTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5390.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis