Browse Element(s) Details


OsAffx.31999.2.S1_at

Description tigr:9640.m03221
TID=OsAffx.31999.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to zinc finger transcription factor-like protein - Arabidopsis thaliana
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3309011/11Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g33070OsAffx.19945.2.S1_at11/1112+19962868..19965843Myb-like DNA-binding domain containing protein, expressed
LOC_Os12g33080Os.11364.1.S1_at11/1112+19976847..199802972-oxoglutarate/malate translocator, chloroplast precursor, putative, expressed
LOC_Os12g33090OsAffx.31999.2.S1_at11/1112+19990275..19992189Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os12g33100Os.27776.1.S1_at11/1112+20000190..20004313guanylate kinase, putative, expressed
LOC_Os12g33110OsAffx.32000.1.S1_at10/1112+20011516..20012263hypothetical protein
LOC_Os12g33120Os.12120.1.S1_at11/1112+20013727..20014553expressed protein
LOC_Os12g33130Os.5390.1.S1_at10/1112+20017000..20017755expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0005737cellular_componentcytoplasm
GO:0003676molecular_functionnucleic acid binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31999.2.S1_at--218--5931Chr12:19991747..19991771 (25 bp)
GAGCATGAGCTCACGGGACCTCGGC
LOC_Os12g33090
OsAffx.31999.2.S1_at--1136--9711Chr12:19991881..19991905 (25 bp)
TCAAGCGTTGCTCCTCGTTCGAGCT
LOC_Os12g33090
OsAffx.31999.2.S1_at--856--7251Chr12:19991909..19991933 (25 bp)
GTCCGGAGCCGCCAATGGCAACCAT
LOC_Os12g33090
OsAffx.31999.2.S1_at--480--691Chr12:19991932..19991956 (25 bp)
ATGAGCCTGACCTCTCATGGGTCAA
LOC_Os12g33090
OsAffx.31999.2.S1_at--333--3771Chr12:19991943..19991967 (25 bp)
CTCTCATGGGTCAACACCCTAGTGA
LOC_Os12g33090
OsAffx.31999.2.S1_at--687--1811Chr12:19991958..19991982 (25 bp)
ACCCTAGTGAAGGAGCCGACACCGG
LOC_Os12g33090
OsAffx.31999.2.S1_at--109--5791Chr12:19991996..19992020 (25 bp)
GACGACATCGGCAATGGATTCCATT
LOC_Os12g33090
OsAffx.31999.2.S1_at--392--6591Chr12:19992012..19992036 (25 bp)
GATTCCATTGGCATCTTGGGACAGA
LOC_Os12g33090
OsAffx.31999.2.S1_at--1011--10811Chr12:19992027..19992051 (25 bp)
TTGGGACAGAACACAAGCCGTGATC
LOC_Os12g33090
OsAffx.31999.2.S1_at--305--2211Chr12:19992039..19992063 (25 bp)
ACAAGCCGTGATCACATCGTCGGAG
LOC_Os12g33090
OsAffx.31999.2.S1_at--140--9191Chr12:19992077..19992101 (25 bp)
TGCCGGAGTCATCAGCAGCTGGCTT
LOC_Os12g33090
Target Sequence 
GAGCATGAGCTCACGGGACCTCGGCAACGCCGCGTCGCTGCTGGTCGGCTCGCCGGTGAGCTCGAGCATGTCCAAATGGG
GGTTCCCCTCCGGCAACCCGGACTGGGGCGCCGACGACGAGGAGCTCGGCCGCCTCAAGCGTTGCTCCTCGTTCGAGCTC
CGGTCCGGAGCCGCCAATGGCAACCATGAGCCTGACCTCTCATGGGTCAACACCCTAGTGAAGGAGCCGACACCGGAGAA
GATGATGACGACGACATCGGCAATGGATTCCATTGGCATCTTGGGACAGAACACAAGCCGTGATCACATCGTCGGAGGCG
AGGATGACACTGCCGGAGTCATCAGCAGCTGGCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31999.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis