Browse Element(s) Details


Os.11364.1.S1_at

Description gb:AK099798.1
DB_XREF= gi:32985007
TID=Os.11364.1
CNT=20
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11364 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013097M20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013097M20, full insert sequence.
FL= gb:AK061957.1 gb:AK099798.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3308011/112-oxoglutarate/malate translocator, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g33060Os.14491.2.S1_x_at2/1112+19948342..19958175transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g33060OsAffx.12558.1.S1_at1/1112+19948342..19958175transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g33070OsAffx.19945.2.S1_at11/1112+19962868..19965843Myb-like DNA-binding domain containing protein, expressed
LOC_Os12g33080Os.11364.1.S1_at11/1112+19976847..199802972-oxoglutarate/malate translocator, chloroplast precursor, putative, expressed
LOC_Os12g33090OsAffx.31999.2.S1_at11/1112+19990275..19992189Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os12g33100Os.27776.1.S1_at11/1112+20000190..20004313guanylate kinase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006499biological_processN-terminal protein myristoylation
GO:0015743biological_processmalate transport
GO:0015367molecular_functionoxoglutarate:malate antiporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11364.1.S1_at--61--7551Chr12:19979743..19979767 (25 bp)
GTGGCGCAGCGCACATTGGAGCAAT
LOC_Os12g33080
Os.11364.1.S1_at--29--9071Chr12:19979774..19979798 (25 bp)
TGCATTTTTGTCAGTGTCCAGCGCC
LOC_Os12g33080
Os.11364.1.S1_at--749--2491Chr12:19979847..19979871 (25 bp)
AACATCATGGGTGGACTCACGCACT
LOC_Os12g33080
Os.11364.1.S1_at--722--9931Chr12:19979898..19979922 (25 bp)
TACGGTGCTGGCTATGTTCCACTGG
LOC_Os12g33080
Os.11364.1.S1_at--205--7951Chr12:19979940..19979964 (25 bp)
GGATTTGTCATTTCCATCGTTAACA
LOC_Os12g33080
Os.11364.1.S1_at--191--2511Chr12:19979961..19979985 (25 bp)
AACATCATCATCTGGCTTGGTGCTG
LOC_Os12g33080
Os.11364.1.S1_at--274--1031Chr12:19980100..19980124 (25 bp)
AGGTACAGCCATCCGCAAATTTTGT
LOC_Os12g33080
Os.11364.1.S1_at--257--3251Chr12:19980138..19980162 (25 bp)
CAACCAGCAACCCATTCTTTTAGTT
LOC_Os12g33080
Os.11364.1.S1_at--1155--10311Chr12:19980179..19980203 (25 bp)
TTTCATCCTTGGGTTCTAACTGTTA
LOC_Os12g33080
Os.11364.1.S1_at--941--2651Chr12:19980210..19980234 (25 bp)
AAGCCTGGGCACAGTTTTACTGGCA
LOC_Os12g33080
Os.11364.1.S1_at--120--9811Chr12:19980268..19980292 (25 bp)
TAACCTGCAGATTGTGACCCTTGTG
LOC_Os12g33080
Target Sequence 
GTGGCGCAGCGCACATTGGAGCAATGTTCACTGCATTTTTGTCAGTGTCCAGCGCCTTGGGCACTCCTCCTCTAATTGCT
GCCATGGTTCTTTCATTCCTCTCAAACATCATGGGTGGACTCACGCACTATGGAATTGGGTCTGCTCCTGTCTTCTACGG
TGCTGGCTATGTTCCACTGGCTCAGTGGTGGGGGTATGGATTTGTCATTTCCATCGTTAACATCATCATCTGGCTTGGTG
CTGGAGGCTTCTGGTGGAAGATGCTCGGCTTGTGGTGAGGAGCAAAGTAAATGCGGGTTTTTCCGTTTCTGTTTCGGTAG
AAGACTGAAAGAAACCTAGCTGAAATTGCGGTAGCACAGGTACAGCCATCCGCAAATTTTGTNGACATGATTTTGCAACC
AGCAACCCATTCTTTTAGTTTGTACCAATACATTTGTTTCATCCTTGGGTTCTAACTGTTAATTGCAAAGCCTGGGCACA
GTTTTACTGGCAACAATTGGTATGTTGAATGGATCTTGGTGATNCTTAACCTGCAGATTGTGACCCTTGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11364.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis