Browse Element(s) Details


Os.29932.2.S1_x_at

Description gb:AK108008.1
DB_XREF= gi:32993217
TID=Os.29932.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.29932 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0681B11.18 (P0681B11.18), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-135-H01, full insert sequence.
FL= gb:AK108008.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g387901/11expressed protein
LOC_Os12g367101/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g38750Os.9122.1.S1_at5/112+23411730..23413216hypothetical protein
LOC_Os02g38760NANA2+23415018..23418833hypothetical protein
LOC_Os02g38770NANA2+23420777..23421778hypothetical protein
LOC_Os02g38780OsAffx.24637.5.S1_x_at5/112+23426755..23436505Protein phosphatase 2C containing protein, expressed
LOC_Os02g38780Os.18261.1.S1_at4/112+23426755..23436505Protein phosphatase 2C containing protein, expressed
LOC_Os02g38780Os.5051.1.S1_x_at2/112+23426755..23436505Protein phosphatase 2C containing protein, expressed
LOC_Os02g38780Os.13531.1.S1_x_at1/112+23426755..23436505Protein phosphatase 2C containing protein, expressed
LOC_Os02g38790OsAffx.31174.5.S1_x_at7/112+23438197..23442968expressed protein
LOC_Os02g38790OsAffx.31174.4.S1_x_at4/112+23438197..23442968expressed protein
LOC_Os02g38790Os.29932.2.S1_x_at1/112+23438197..23442968expressed protein
LOC_Os02g38800Os.13531.1.S1_x_at11/112+23445846..2344882726S proteasome non-ATPase regulatory subunit 6, putative, expressed
LOC_Os02g38810Os.18441.1.S1_at11/112+23455595..2345997726S proteasome non-ATPase regulatory subunit 6, putative, expressed
LOC_Os02g38820Os.14404.1.S1_at11/112+23460100..23462169expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.29932.2.S1_x_at--1105--7193Chr10:8240270..8240290 (21 bp)
GTCGTCGCAGCGTTGTTGCCGACAT
NONE
Os.29932.2.S1_x_at--89--10791Chr01:24140310..24140334 (25 bp)
TTGTTGCCGACATCTTCATCGAGCA
NONE
Os.29932.2.S1_x_at--719--9411Chr01:24140251..24140275 (25 bp)
TCGTCGTCTGTGGTGGCACAGCCGC
NONE
Os.29932.2.S1_x_at--729--6011Chr01:24140172..24140196 (25 bp)
GAGAGATGTGGTGGCTCAGCACCAC
NONE
Os.29932.2.S1_x_at--947--9071Chr01:24140047..24140071 (25 bp)
TGCTAGGAGGCCTAAGGGCAATTAA
NONE
Os.29932.2.S1_x_at--1125--3111Chr01:24140028..24140052 (25 bp)
AATTAAGTCATTTGGCGCAGCCGTT
NONE
Os.29932.2.S1_x_at--1079--5051Chr01:24140012..24140036 (25 bp)
GCAGCCGTTATCCACCGTTAGGATA
NONE
Os.29932.2.S1_x_at--1041--9811Chr01:24139989..24140013 (25 bp)
TAAAAACGGACGGAATGATGCGGAG
NONE
Os.29932.2.S1_x_at--449--6133Chr12:22450419..22450443 (25 bp)
GAGGGCGCGATAAAATTCGACGATG
LOC_Os12g36710
Os.29932.2.S1_x_at--486--10631Chr01:24139952..24139976 (25 bp)
TTCGACGATGTCACAGAGGGAGGCT
NONE
Os.29932.2.S1_x_at--132--5133Chr04:24074132..24074156 (25 bp)
GCACAGAGGCAGACACCATCTTTTT
NONE
Target Sequence 
GTCGTCGCAGCGTTGTTGCCGACATCTTCATCGAGCAGCGATGCCGCCGCCGCCGTCGTCGCAGCGCCCCGTCGTCGTCT
GTGGTGGCACAGCCGCGCACTAACGCCGGCCACCGGTGGCGGCGGCACAAGGCCGACGCGGCGAGGATGCGAGAGATGTG
GTGGCTCAGCACCACGGCCGCCGTTGTCACCCTTCGCCTCGCCGACCGCAGCGGCATCGCCGGCGACTCCCCTCCCGCTT
CTTTGCTGCTGCTGCATTTGAGGGAGAGAGGAGAGTGCTAGGAGGCCTAAGGGCAATTAAGTCATTTGGCGCAGCCGTTA
TCCACCGTTAGGATAAAAACGGACGGAATGATGCGGAGGGCGCGATAAAATTCGACGATGTCACAGAGGGAGGCTCGAAC
TTTTTAGTGGCACAGAGGCAGACACCATCTTTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.29932.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis