Browse Element(s) Details


Os.54071.1.S1_at

Description gb:AK101692.1
DB_XREF= gi:32986901
TID=Os.54071.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54071 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033059L02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033059L02, full insert sequence.
FL= gb:AK101692.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4925011/11UDP-glucose/GDP-mannose dehydrogenase family, central domain containing protein, expressed
LOC_Os03g053604/11retrotransposon protein, putative, unclassified
LOC_Os12g367101/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g49230OsAffx.26536.1.S1_at11/114+29147940..29148821B3 DNA binding domain containing protein
LOC_Os04g49240OsAffx.4127.1.S1_at11/114+29166710..29167220expressed protein
LOC_Os04g49250Os.54071.1.S1_at11/114+29172031..29173632UDP-glucose/GDP-mannose dehydrogenase family, central domain containing protein, expressed
LOC_Os04g49250OsAffx.17756.1.S1_x_at1/114+29172031..29173632UDP-glucose/GDP-mannose dehydrogenase family, central domain containing protein, expressed
LOC_Os04g49260Os.55252.1.S1_at8/114+29189821..29190528copper-binding protein, putative, expressed
LOC_Os04g49270OsAffx.14339.1.S1_at11/114+29193644..29197750hypothetical protein
LOC_Os04g49280OsAffx.14340.1.S1_at11/114+29198531..29199912hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0003979molecular_functionUDP-glucose 6-dehydrogenase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54071.1.S1_at--834--1332Chr04:29173055..29173079 (25 bp)
AGAGGTCGTCCTTGCAGGAGCAGCC
LOC_Os04g49250
Os.54071.1.S1_at--18--8512Chr04:29173129..29173153 (25 bp)
TGGCAGATGCGGCAATTCCTCTCGG
LOC_Os04g49250
Os.54071.1.S1_at--883--8452Chr04:29173166..29173190 (25 bp)
TGGCCTTGGCGATCGTCACCACTCA
LOC_Os04g49250
Os.54071.1.S1_at--1046--51Chr04:29173214..29173238 (25 bp)
ATTGCTCATGCCAAACAAACCTACC
LOC_Os04g49250
Os.54071.1.S1_at--674--53Chr04:29173278..29173302 (25 bp)
ATTGCTTCTATACCAAATCCGGACA
LOC_Os04g49250
Os.54071.1.S1_at--724--7692Chr04:29173333..29173357 (25 bp)
GGGTAACAAAGTCATTTTGCTGCAC
LOC_Os04g49250
Os.54071.1.S1_at--35--2112Chr04:29173454..29173478 (25 bp)
ACAAAGTCAGCCACCATCTTTTTTA
LOC_Os04g49250
Os.54071.1.S1_at--744--437Chr07:22957543..22957624 (25 bp)
ATCTTTTTTAATGGCACACAGGGAA
NONE
Os.54071.1.S1_at--626--851Chr04:29173479..29173503 (25 bp)
ATGGCACACAGGGAAAGACCTCTAA
LOC_Os04g49250
Os.54071.1.S1_at--299--10191Chr04:29173589..29173613 (25 bp)
TATATTATCTCTGTACTTGCGGGTA
LOC_Os04g49250
Os.54071.1.S1_at--146--4671Chr04:29173607..29173630 (24 bp)
GCGGGTATTTATATTGACTTGCCAC
LOC_Os04g49250
Target Sequence 
AGAGGTCGTCCTTGCAGGAGCAGCCGAGGAACATGCTGGAGCCGGACTCGGCGACGGCGCTGTCGAGGCCGAGGTGGCAG
ATGCGGCAATTCCTCTCGGCCGTGTCCGGGCTGGCCTTGGCGATCGTCACCACTCACCACCTGCTCGTCGTCGTTCACCA
TTGCTCATGCCAAACAAACCTACCAAAAAAACAATTCGAGAAAAAGGAAAATAATCACTCGAAATTGCTTCTATACCAAA
TCCGGACAAGAGCAAAGAAGGGAGCAAACTTGTTCAAAGGGTAACAAAGTCATTTTGCTGCACCGTTACCCACCGTTAGG
AAAAAAACGGTCGGAATGGTGTGGAGGACGCGATAAAGTTCGACGATATTATAGAGGGAGGCTCGAACTTTTTAGTGGCA
CAAAGTCAGCCACCATCTTTTTTAATGGCACACAGGGAAAGACCTCTAAAGTATGCAGGTTTAGTAGAATACACGAAGTT
GTATATAGTAATGTAGTATCTGTAAAAAAATAATGGAGATGAGAACTGCATATATATATTATCTCTGTACTTGCGGGTAT
TTATATTGACTTGCCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54071.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis