Browse Element(s) Details


Os.28429.3.S1_at

Description gb:AB040028.1
DB_XREF= gi:7328527
TID=Os.28429.3
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.28429 (NCBI UniGene Cluster)
UG_TITLE=MRNA for RPM1 like protein, partial cds
DEF=Oryza sativa mRNA for RPM1 like protein, partial cds.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3672011/11NB-ARC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g36680Os.27640.1.A1_s_at11/1112+22432801..22435714expressed protein
LOC_Os12g36690Os.54062.1.S1_at11/1112+22443509..22447723NB-ARC domain containing protein, expressed
LOC_Os12g36690Os.28429.3.S1_x_at1/1112+22443509..22447723NB-ARC domain containing protein, expressed
LOC_Os12g36700OsAffx.7811.1.S1_at10/1112+22448593..22449262hypothetical protein
LOC_Os12g36710OsAffx.7812.1.S1_at11/1112+22450130..22451043hypothetical protein
LOC_Os12g36710Os.29932.2.S1_x_at1/1112+22450130..22451043hypothetical protein
LOC_Os12g36710Os.54071.1.S1_at1/1112+22450130..22451043hypothetical protein
LOC_Os12g36720Os.28429.3.S1_at11/1112+22455301..22458833NB-ARC domain containing protein, expressed
LOC_Os12g36720Os.28429.3.S1_x_at11/1112+22455301..22458833NB-ARC domain containing protein, expressed
LOC_Os12g36720Os.28429.1.S1_at9/1112+22455301..22458833NB-ARC domain containing protein, expressed
LOC_Os12g36730Os.28429.1.S1_at6/1112+22465177..22468340NB-ARC domain containing protein
LOC_Os12g36730Os.28429.3.S1_x_at6/1112+22465177..22468340NB-ARC domain containing protein
LOC_Os12g36740OsAffx.19992.2.S1_at9/1112+22474207..22477036expressed protein
LOC_Os12g36740OsAffx.19992.1.S1_s_at7/1112+22474207..22477036expressed protein
LOC_Os12g36740Os.40053.1.A1_at6/1112+22474207..22477036expressed protein
LOC_Os12g36750Os.48076.1.S1_at8/1112+22478221..22481232expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009613biological_processresponse to pest, pathogen or parasite
GO:0009626biological_processhypersensitive response
GO:0019897cellular_componentextrinsic to plasma membrane
GO:0000166molecular_functionnucleotide binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.28429.3.S1_at--563--7111Chr12:22457860..22457884 (25 bp)
GTCAGCGAGCGTCGTGACAGGTGCA
LOC_Os12g36720
Os.28429.3.S1_at--467--3391Chr12:22457858..22457882 (25 bp)
CAGCGAGCGTCGTGACAGGTGCAGA
LOC_Os12g36720
Os.28429.3.S1_at--1129--3991Chr12:22457848..22457872 (25 bp)
CGTGACAGGTGCAGAGTCGATGACA
LOC_Os12g36720
Os.28429.3.S1_at--1108--8931Chr12:22457846..22457870 (25 bp)
TGACAGGTGCAGAGTCGATGACATC
LOC_Os12g36720
Os.28429.3.S1_at--1038--2111Chr12:22457844..22457868 (25 bp)
ACAGGTGCAGAGTCGATGACATCGC
LOC_Os12g36720
Os.28429.3.S1_at--260--3471Chr12:22457843..22457867 (25 bp)
CAGGTGCAGAGTCGATGACATCGCT
LOC_Os12g36720
Os.28429.3.S1_at--212--1051Chr12:22457842..22457866 (25 bp)
AGGTGCAGAGTCGATGACATCGCTG
LOC_Os12g36720
Os.28429.3.S1_at--1111--7331Chr12:22457840..22457864 (25 bp)
GTGCAGAGTCGATGACATCGCTGCC
LOC_Os12g36720
Os.28429.3.S1_at--747--9031Chr12:22457839..22457863 (25 bp)
TGCAGAGTCGATGACATCGCTGCCA
LOC_Os12g36720
Os.28429.3.S1_at--948--5031Chr12:22457838..22457862 (25 bp)
GCAGAGTCGATGACATCGCTGCCAG
LOC_Os12g36720
Os.28429.3.S1_at--821--3411Chr12:22457837..22457861 (25 bp)
CAGAGTCGATGACATCGCTGCCAGG
LOC_Os12g36720
Target Sequence 
GTCAGCGAGCGTCGTGACAGGTGCAGAGTCGATGACATCGCTGCCAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.28429.3.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis