Browse Element(s) Details


Os.54062.1.S1_at

Description gb:AK101637.1
DB_XREF= gi:32986846
TID=Os.54062.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54062 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033055C04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033055C04, full insert sequence.
FL= gb:AK101637.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3669011/11NB-ARC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g36670Os.49486.1.S1_at11/1112+22424316..22428387Leucine Rich Repeat family protein, expressed
LOC_Os12g36680Os.27640.1.A1_s_at11/1112+22432801..22435714expressed protein
LOC_Os12g36690Os.54062.1.S1_at11/1112+22443509..22447723NB-ARC domain containing protein, expressed
LOC_Os12g36690Os.28429.3.S1_x_at1/1112+22443509..22447723NB-ARC domain containing protein, expressed
LOC_Os12g36700OsAffx.7811.1.S1_at10/1112+22448593..22449262hypothetical protein
LOC_Os12g36710OsAffx.7812.1.S1_at11/1112+22450130..22451043hypothetical protein
LOC_Os12g36710Os.29932.2.S1_x_at1/1112+22450130..22451043hypothetical protein
LOC_Os12g36710Os.54071.1.S1_at1/1112+22450130..22451043hypothetical protein
LOC_Os12g36720Os.28429.3.S1_at11/1112+22455301..22458833NB-ARC domain containing protein, expressed
LOC_Os12g36720Os.28429.3.S1_x_at11/1112+22455301..22458833NB-ARC domain containing protein, expressed
LOC_Os12g36720Os.28429.1.S1_at9/1112+22455301..22458833NB-ARC domain containing protein, expressed
LOC_Os12g36730Os.28429.1.S1_at6/1112+22465177..22468340NB-ARC domain containing protein
LOC_Os12g36730Os.28429.3.S1_x_at6/1112+22465177..22468340NB-ARC domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009613biological_processresponse to pest, pathogen or parasite
GO:0009626biological_processhypersensitive response
GO:0019897cellular_componentextrinsic to plasma membrane
GO:0000166molecular_functionnucleotide binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54062.1.S1_at--782--5311Chr12:22444078..22444102 (25 bp)
GAAGGTGATCCGTTTCGGCTGAAAC
LOC_Os12g36690
Os.54062.1.S1_at--668--8331Chr12:22444062..22444086 (25 bp)
GGCTGAAACAACTCACTATCCACAG
LOC_Os12g36690
Os.54062.1.S1_at--1066--5571Chr12:22443949..22443973 (25 bp)
GAAAGGCTTTGTCTTCTGATTATGA
LOC_Os12g36690
Os.54062.1.S1_at--911--3631Chr12:22443871..22443895 (25 bp)
CTTCGTCATGTAACCATTCATTCCT
LOC_Os12g36690
Os.54062.1.S1_at--606--3871Chr12:22443803..22443827 (25 bp)
CTGTCCTAATCAAGCAGCTCTCGAA
LOC_Os12g36690
Os.54062.1.S1_at--397--2331Chr12:22443765..22443789 (25 bp)
AAAGCTTCACTCAGGTACTTAGCTG
LOC_Os12g36690
Os.54062.1.S1_at--1001--9873Chr12:22465141..22465165 (25 bp)
TACTTAGCTGATTTCTTCCCCTAAT
NONE
Os.54062.1.S1_at--1119--1731Chr12:22443720..22443744 (25 bp)
ACCTTCTTTCATGTAGCCGTTATGT
LOC_Os12g36690
Os.54062.1.S1_at--312--6791Chr12:22443702..22443726 (25 bp)
GTTATGTAATGCTAGGTCCTCCAAG
LOC_Os12g36690
Os.54062.1.S1_at--702--3691Chr12:22443592..22443616 (25 bp)
CTATCTTGGCTTGGTGTACAGTAAT
LOC_Os12g36690
Os.54062.1.S1_at--1013--4771Chr12:22443537..22443561 (25 bp)
GCTGCCGCGTTATTCATTATCTTCA
LOC_Os12g36690
Target Sequence 
GAAGGTGATCCGTTTCGGCTGAAACAACTCACTATCCACAGAGGTGCATGTGCATTCCGGAGTTTAAAATATTTTCACCT
TTATAGCTACATGATGCCATCGTTTCAACCAGGAGCTATGCCTCACCTTGAAAGGCTTTGTCTTCTGATTATGACTTTTA
TAGTGAGGGGTGACTTGAATGATTTAGGTTTGGAGAACCTCCACTCCCTTCGTCATGTAACCATTCATTCCTGTAATGAC
GAAACCAAGGCTGTTGTTAAAGAGGCACTTAAGGACTGTCCTAATCAAGCAGCTCTCGAATTATACTGAACTAAAAGCTT
CACTCAGGTACTTAGCTGATTTCTTCCCCTAATCAACAACCTTCTTTCATGTAGCCGTTATGTAATGCTAGGTCCTCCAA
GCCTCCCACTCAACGTTTTTAATTAATATGATGTATCTTTATGAACATTAATTTGTTCAGAACTTTAGTTACTATATGTA
TGTTTTCTATCTTGGCTTGGTGTACAGTAATGAATGATGGGCTTTGTGCGTCTTTGATGCAGCTGCCGCGTTATTCATTA
TCTTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54062.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis