Browse Element(s) Details


Os.49486.1.S1_at

Description gb:AK060492.1
DB_XREF= gi:32970510
TID=Os.49486.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.49486 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-016-C10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-016-C10, full insert sequence.
FL= gb:AK060492.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3667011/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g36660OsAffx.19991.1.S1_at11/1112+22414216..22415713MATE efflux family protein
LOC_Os12g36670Os.49486.1.S1_at11/1112+22424316..22428387Leucine Rich Repeat family protein, expressed
LOC_Os12g36680Os.27640.1.A1_s_at11/1112+22432801..22435714expressed protein
LOC_Os12g36690Os.54062.1.S1_at11/1112+22443509..22447723NB-ARC domain containing protein, expressed
LOC_Os12g36690Os.28429.3.S1_x_at1/1112+22443509..22447723NB-ARC domain containing protein, expressed
LOC_Os12g36700OsAffx.7811.1.S1_at10/1112+22448593..22449262hypothetical protein
LOC_Os12g36710OsAffx.7812.1.S1_at11/1112+22450130..22451043hypothetical protein
LOC_Os12g36710Os.29932.2.S1_x_at1/1112+22450130..22451043hypothetical protein
LOC_Os12g36710Os.54071.1.S1_at1/1112+22450130..22451043hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0009723biological_processresponse to ethylene stimulus
GO:0010105biological_processnegative regulation of ethylene mediated signaling pathway
GO:0005634cellular_componentnucleus
GO:0019005cellular_componentSCF ubiquitin ligase complex
GO:0004842molecular_functionubiquitin-protein ligase activity
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49486.1.S1_at--888--7151Chr12:22427789..22427813 (25 bp)
GTCTACAAGGACTAAACCTGCTCTC
LOC_Os12g36670
Os.49486.1.S1_at--596--2371Chr12:22427802..22427826 (25 bp)
AAACCTGCTCTCATATCATCATCTG
LOC_Os12g36670
Os.49486.1.S1_at--849--7331Chr12:22427826..22427850 (25 bp)
GTGCAGTGTTAATATCCTCGGATCA
LOC_Os12g36670
Os.49486.1.S1_at--123--9451Chr12:22427843..22427867 (25 bp)
TCGGATCATACACCATGGAGCCCTT
LOC_Os12g36670
Os.49486.1.S1_at--157--1731Chr12:22427854..22427878 (25 bp)
ACCATGGAGCCCTTACCAAGTCTAG
LOC_Os12g36670
Os.49486.1.S1_at--1080--3211Chr12:22427870..22427894 (25 bp)
CAAGTCTAGCATGCTTACAAGCCAT
LOC_Os12g36670
Os.49486.1.S1_at--487--2211Chr12:22427886..22427910 (25 bp)
ACAAGCCATGTTAGATACCCGCAAT
LOC_Os12g36670
Os.49486.1.S1_at--588--311Chr12:22427925..22427949 (25 bp)
ATACCCAAGATGTACTGACGATGGT
LOC_Os12g36670
Os.49486.1.S1_at--901--1871Chr12:22427942..22427966 (25 bp)
ACGATGGTGTCTCTGCATTGCTGCA
LOC_Os12g36670
Os.49486.1.S1_at--933--10711Chr12:22427959..22427983 (25 bp)
TTGCTGCAGTGCCATCCTTATGTTT
LOC_Os12g36670
Os.49486.1.S1_at--694--8751Chr12:22428337..22428361 (25 bp)
TGTACTCATTCAGGCAGAGATTTGA
LOC_Os12g36670
Target Sequence 
GTCTACAAGGACTAAACCTGCTCTCATATCATCATCTGTGCAGTGTTAATATCCTCGGATCATACACCATGGAGCCCTTA
CCAAGTCTAGCATGCTTACAAGCCATGTTAGATACCCGCAATAATCGTCAATTTNCATACCCAAGATGTACTGACGATGG
TGTCTCTGCATTGCTGCAGTGCCATCCTTATGTTTGGCAACTCCTAGACCAATGTTGTCATCTTCAGATTAAAATCCAAC
ATTTGCAAACATGAGGCATCGAAACAGTTATGTTCTGAGCAAGTGATCCTTGTACCAGACTGCAATGAAATGCTCTACAC
TTTCAATTGGTATATGCAAAGAACAATGNCATGTTTGCCTTTGTCATTGCTCCNACTCCAGGCTTGCTGACCGATGCATC
TNTTAGAGTTTAAGAACAGCTTTAGATCGCAGAANAACTCTTCCTTGATGCTCCNGGATCTGGGCTGGGACACTGGTTTC
ATGGTTGTCTGNATTGNATGACTGGTGGACCCGTCCTTTTTNTTTTACCTTGATTACAATAATCTCGATGTACTCATTCA
GGCAGAGATTTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49486.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis