Browse Element(s) Details


OsAffx.27939.1.S1_at

Description tigr:9634.m03288
TID=OsAffx.27939.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3480011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g34760NANA6+20202046..20208199retrotransposon protein, putative, unclassified
LOC_Os06g34770NANA6+20209488..20209965hypothetical protein
LOC_Os06g34780OsAffx.5011.1.S1_at11/116+20212106..20214877expressed protein
LOC_Os06g34780Os.22962.2.A1_at1/116+20212106..20214877expressed protein
LOC_Os06g34790Os.22372.1.S1_at11/116+20222908..20223695expressed protein
LOC_Os06g34800OsAffx.27939.1.S1_at11/116+20224147..20224890hypothetical protein
LOC_Os06g34810OsAffx.27940.1.S1_at11/116+20229770..20230677hypothetical protein
LOC_Os06g34820Os.35344.18.S1_x_at10/116+20235821..20241561Transposable element protein, putative, MuDR
LOC_Os06g34820Os.35344.3.S1_x_at8/116+20235821..20241561Transposable element protein, putative, MuDR
LOC_Os06g34820OsAffx.22940.5.S1_x_at3/116+20235821..20241561Transposable element protein, putative, MuDR

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27939.1.S1_at--774--6371Chr06:20224227..20224251 (25 bp)
GATCCTCGACAGACAAATCGGCGCT
LOC_Os06g34800
OsAffx.27939.1.S1_at--444--4792Chr06:20224341..20224365 (25 bp)
GCTCGAGCTCATCGATGAGCGTGAT
LOC_Os06g34800
OsAffx.27939.1.S1_at--1101--671Chr06:20224367..20224391 (25 bp)
ATGACAGGTTGGGATCTCTGCCTAG
LOC_Os06g34800
OsAffx.27939.1.S1_at--265--7971Chr06:20224378..20224402 (25 bp)
GGATCTCTGCCTAGATCTGGTGAGA
LOC_Os06g34800
OsAffx.27939.1.S1_at--298--1351Chr06:20224402..20224426 (25 bp)
AGAGAAGCCACCACCGAGCTACCGA
LOC_Os06g34800
OsAffx.27939.1.S1_at--866--4131Chr06:20224458..20224482 (25 bp)
CGCTCGTCGCTTGTCAGTGCGGGAA
LOC_Os06g34800
OsAffx.27939.1.S1_at--380--4691Chr06:20224679..20224703 (25 bp)
GCGGACGCAGAGCTCTCCTTGTTCT
LOC_Os06g34800
OsAffx.27939.1.S1_at--507--3832Chr09:15963158..15963178 (21 bp)
CTGCTGCTACTTGCCAGCGTTGACA
NONE
OsAffx.27939.1.S1_at--332--9171Chr06:20224731..20224755 (25 bp)
TGCCAGCGTTGACACCGGAGTTGAA
LOC_Os06g34800
OsAffx.27939.1.S1_at--186--4051Chr06:20224761..20224785 (25 bp)
CGATGAGGTTGACAAAGCACACGCC
LOC_Os06g34800
OsAffx.27939.1.S1_at--401--2351Chr06:20224774..20224798 (25 bp)
AAAGCACACGCCACAGATGAAGAGA
LOC_Os06g34800
Target Sequence 
GATCCTCGACAGACAAATCGGCGCTGGAGAAGGAGGGCACAGCGATAGATGGGGGAGGGGCGGGACAGGAGGAGAGCTCC
TCAGCGAGGGCAGCGGCGAGCAGGACGCGCATCCGCTCGAGCTCATCGATGAGCGTGATGATGACAGGTTGGGATCTCTG
CCTAGATCTGGTGAGAGAGAAGCCACCACCGAGCTACCGAGGTCCCGCCATGGCTCATCCGTCCCGCCGCTCGCTCGTCG
CTTGTCAGTGCGGGAAGAGGCGGTGAGGGTGGTGGTTGCTCGTGGAGCATCGATGGGCTGGAGCATGGGGGCATGGGAGG
AGGCCGAGCCGCACGCCGCCGCTGGAGGCCGCGGACGCAGAGCTCTCCTTGTTCTCCCCCGTGTGTCGGTGCTGCTGCTA
CTTGCCAGCGTTGACACCGGAGTTGAAGAAGCCGATGAGGTTGACAAAGCACACGCCACAGATGAAGAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27939.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis