Browse Element(s) Details


OsAffx.27940.1.S1_at

Description tigr:9634.m03289
TID=OsAffx.27940.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3481011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g34760NANA6+20202046..20208199retrotransposon protein, putative, unclassified
LOC_Os06g34770NANA6+20209488..20209965hypothetical protein
LOC_Os06g34780OsAffx.5011.1.S1_at11/116+20212106..20214877expressed protein
LOC_Os06g34780Os.22962.2.A1_at1/116+20212106..20214877expressed protein
LOC_Os06g34790Os.22372.1.S1_at11/116+20222908..20223695expressed protein
LOC_Os06g34800OsAffx.27939.1.S1_at11/116+20224147..20224890hypothetical protein
LOC_Os06g34810OsAffx.27940.1.S1_at11/116+20229770..20230677hypothetical protein
LOC_Os06g34820Os.35344.18.S1_x_at10/116+20235821..20241561Transposable element protein, putative, MuDR
LOC_Os06g34820Os.35344.3.S1_x_at8/116+20235821..20241561Transposable element protein, putative, MuDR
LOC_Os06g34820OsAffx.22940.5.S1_x_at3/116+20235821..20241561Transposable element protein, putative, MuDR
LOC_Os06g34830Os.51683.1.S1_at11/116+20250682..20252931Amino acid transporter protein, putative, expressed
LOC_Os06g34840OsAffx.27941.1.S1_at8/116+20253446..20256629Protease inhibitor/seed storage/LTP family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27940.1.S1_at--305--2151Chr06:20230619..20230643 (25 bp)
ACAGAGCTTTGAGTGGCGGCGACAA
LOC_Os06g34810
OsAffx.27940.1.S1_at--567--2731Chr06:20230572..20230596 (25 bp)
AAGAATGATGCCACACGGAGCTTCC
LOC_Os06g34810
OsAffx.27940.1.S1_at--849--1591Chr06:20230530..20230554 (25 bp)
AGCTCCTTCGTGTCGTGCCTGAGGG
LOC_Os06g34810
OsAffx.27940.1.S1_at--185--1071Chr06:20229969..20229993 (25 bp)
AGGGCATGGCGTCAAAACTCAAAAC
LOC_Os06g34810
OsAffx.27940.1.S1_at--237--5571Chr06:20229942..20229966 (25 bp)
GAAAGAAACTTCTTCCTCAGCAGCC
LOC_Os06g34810
OsAffx.27940.1.S1_at--793--9651Chr06:20229926..20229950 (25 bp)
TCAGCAGCCCCAAGTCGCGAGTCTA
LOC_Os06g34810
OsAffx.27940.1.S1_at--1072--9331Chr06:20229912..20229936 (25 bp)
TCGCGAGTCTACAGGTCGAGGCCGT
LOC_Os06g34810
OsAffx.27940.1.S1_at--214--1671Chr06:20229861..20229885 (25 bp)
AGCCCAGCCACCAAAGAATCGTGTC
LOC_Os06g34810
OsAffx.27940.1.S1_at--875--5251Chr06:20229846..20229870 (25 bp)
GAATCGTGTCGCAGGTCGACGTATA
LOC_Os06g34810
OsAffx.27940.1.S1_at--138--7811Chr06:20229833..20229857 (25 bp)
GGTCGACGTATATCACAGGCTCATG
LOC_Os06g34810
OsAffx.27940.1.S1_at--164--6891Chr06:20229826..20229850 (25 bp)
GTATATCACAGGCTCATGGCCGCTG
LOC_Os06g34810
Target Sequence 
ACAGAGCTTTGAGTGGCGGCGACAACCAAAAAGGACTGAACGCGAAGAAGAATGATGCCACACGGAGCTTCCCGTCGCTA
TCACCATCGAGCTCCTTCGTGTCGTGCCTGAGGGAGGGCATGGCGTCAAAACTCAAAACTCGAAAGAAACTTCTTCCTCA
GCAGCCCCAAGTCGCGAGTCTACAGGTCGAGGCCGTCGCTGCCTCCGAGACTCTAACTCCGCAGCCCAGCCACCAAAGAA
TCGTGTCGCAGGTCGACGTATATCACAGGCTCATGGCCGCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27940.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis