Browse Element(s) Details


Os.51683.1.S1_at

Description gb:AK063382.1
DB_XREF= gi:32973400
TID=Os.51683.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51683 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-114-G03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-114-G03, full insert sequence.
FL= gb:AK063382.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3483011/11Amino acid transporter protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g34810OsAffx.27940.1.S1_at11/116+20229770..20230677hypothetical protein
LOC_Os06g34820Os.35344.18.S1_x_at10/116+20235821..20241561Transposable element protein, putative, MuDR
LOC_Os06g34820Os.35344.3.S1_x_at8/116+20235821..20241561Transposable element protein, putative, MuDR
LOC_Os06g34820OsAffx.22940.5.S1_x_at3/116+20235821..20241561Transposable element protein, putative, MuDR
LOC_Os06g34830Os.51683.1.S1_at11/116+20250682..20252931Amino acid transporter protein, putative, expressed
LOC_Os06g34840OsAffx.27941.1.S1_at8/116+20253446..20256629Protease inhibitor/seed storage/LTP family protein
LOC_Os06g34850Os.52072.1.S1_at11/116+20264692..20265467expressed protein
LOC_Os06g34860NANA6+20269647..20270150Zinc finger, C3HC4 type family protein
LOC_Os06g34870NANA6+20275504..20280210Zinc finger, C3HC4 type family protein

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Gene Ontology Classification
GO idTypeName
GO:0006810biological_processtransport
GO:0015802biological_processbasic amino acid transport
GO:0016020cellular_componentmembrane
GO:0015171molecular_functionamino acid transporter activity
GO:0015326molecular_functioncationic amino acid transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51683.1.S1_at--868--9531Chr06:20252494..20252518 (25 bp)
TCTACTACGTGCTCTTCGGCGTGCA
LOC_Os06g34830
Os.51683.1.S1_at--175--4271Chr06:20252607..20252631 (25 bp)
CCGGCGTGACACAAGGTGAACGTGT
LOC_Os06g34830
Os.51683.1.S1_at--556--7871Chr06:20252646..20252670 (25 bp)
GGTTAGTCAAGGAGATGGTCACATT
LOC_Os06g34830
Os.51683.1.S1_at--629--8051Chr06:20252656..20252680 (25 bp)
GGAGATGGTCACATTAGTCATTAAT
LOC_Os06g34830
Os.51683.1.S1_at--864--10051Chr06:20252681..20252705 (25 bp)
TAGTACGTTCTTTGAATTATCAGGA
LOC_Os06g34830
Os.51683.1.S1_at--204--10171Chr06:20252698..20252722 (25 bp)
TATCAGGATACATTTCACATTTATT
LOC_Os06g34830
Os.51683.1.S1_at--379--2031Chr06:20252714..20252738 (25 bp)
ACATTTATTAAGTGGCCGATCTAGA
LOC_Os06g34830
Os.51683.1.S1_at--413--10371Chr06:20252743..20252767 (25 bp)
TTTTTTCAGAGCATTAGCAAGCACA
LOC_Os06g34830
Os.51683.1.S1_at--449--10471Chr06:20252794..20252818 (25 bp)
TTAAAATGGTGTGATCCGCCTTATC
LOC_Os06g34830
Os.51683.1.S1_at--424--4311Chr06:20252812..20252836 (25 bp)
CCTTATCCACCCATGCATTTAGTTG
LOC_Os06g34830
Os.51683.1.S1_at--610--8171Chr06:20252836..20252860 (25 bp)
GGAACTCTATGAGCAGAGGTTTTTC
LOC_Os06g34830
Target Sequence 
TCTACTACGTGCTCTTCGGCGTGCACGCCACCTACGACGTCGCGCACGCGGACGACGCGGCTGCCGACAACCTCGAGCAC
GGCAAGATCGCGGCGGCGCCCGCGCCCACGACGCCGGCGTGACACAAGGTGAACGTGTTGATTATAGTTGATGGTTAGTC
AAGGAGATGGTCACATTAGTCATTAATTAGTACGTTCTTTGAATTATCAGGATACATTTCACATTTATTAAGTGGCCGAT
CTAGATTTTTTTTTTCAGAGCATTAGCAAGCACAATTAGAGGGGTCGAAAATTGAAACCATTAAAATGGTGTGATCCGCC
TTATCCACCCATGCATTTAGTTGGAACTCTATGAGCAGAGGTTTTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51683.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis