Browse Element(s) Details


Os.52072.1.S1_at

Description gb:AK064662.1
DB_XREF= gi:32974680
TID=Os.52072.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52072 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-115-A09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-115-A09, full insert sequence.
FL= gb:AK064662.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3485011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g34820Os.35344.18.S1_x_at10/116+20235821..20241561Transposable element protein, putative, MuDR
LOC_Os06g34820Os.35344.3.S1_x_at8/116+20235821..20241561Transposable element protein, putative, MuDR
LOC_Os06g34820OsAffx.22940.5.S1_x_at3/116+20235821..20241561Transposable element protein, putative, MuDR
LOC_Os06g34830Os.51683.1.S1_at11/116+20250682..20252931Amino acid transporter protein, putative, expressed
LOC_Os06g34840OsAffx.27941.1.S1_at8/116+20253446..20256629Protease inhibitor/seed storage/LTP family protein
LOC_Os06g34850Os.52072.1.S1_at11/116+20264692..20265467expressed protein
LOC_Os06g34860NANA6+20269647..20270150Zinc finger, C3HC4 type family protein
LOC_Os06g34870NANA6+20275504..20280210Zinc finger, C3HC4 type family protein
LOC_Os06g34880OsAffx.27942.1.S1_at1/116+20285764..20286147Zinc finger, C3HC4 type family protein
LOC_Os06g34890OsAffx.15745.1.S1_at11/116+20288016..20288432hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52072.1.S1_at--610--7971Chr06:20265138..20265162 (25 bp)
GGATCGTCGGCGTGCCACAACGACA
LOC_Os06g34850
Os.52072.1.S1_at--1040--1911Chr06:20265211..20265235 (25 bp)
ACGGGAGCCCGTGATCGTCGACGAC
LOC_Os06g34850
Os.52072.1.S1_at--657--1811Chr06:20265243..20265267 (25 bp)
ACGAAGACGGCCGTGTTCGTTCCTG
LOC_Os06g34850
Os.52072.1.S1_at--49--6371Chr06:20265305..20265329 (25 bp)
GATCCAGTTCCAAGAGCTCATTCAA
LOC_Os06g34850
Os.52072.1.S1_at--1090--6291Chr06:20265336..20265360 (25 bp)
GATGATGAGTTAGTTCTTGTTTCGA
LOC_Os06g34850
Os.52072.1.S1_at--244--6791Chr06:20265344..20265368 (25 bp)
GTTAGTTCTTGTTTCGATTCGTCAC
LOC_Os06g34850
Os.52072.1.S1_at--34--10231Chr06:20265355..20265379 (25 bp)
TTTCGATTCGTCACCTTCTCGGCTT
LOC_Os06g34850
Os.52072.1.S1_at--9--9511Chr06:20265379..20265403 (25 bp)
TCTCCCCTGTTCTTGAATTTGTAAA
LOC_Os06g34850
Os.52072.1.S1_at--832--10391Chr06:20265419..20265443 (25 bp)
TTTTGTCCTCCGAAAATGAGTGCTT
LOC_Os06g34850
Os.52072.1.S1_at--495--1131Chr06:20265437..20265461 (25 bp)
AGTGCTTACACTACAATCTCTTGGA
LOC_Os06g34850
Os.52072.1.S1_at--814--9851Chr06:20265443..20265467 (25 bp)
TACACTACAATCTCTTGGACATTCC
LOC_Os06g34850
Target Sequence 
GGATCGTCGGCGTGCCACAACGACATGCCGGCCGCCGCCGCCGACGCGGAGTTCTTCGTGTGCGGCGGCGGCGACGGGAG
CCCGTGATCGTCGACGACGACGACGACGAAGACGGCCGTGTTCGTTCCTGCCTGCCCGGTGCTGGACTTGTTCGATCAAC
AAATGAAGATCCAGTTCCAAGAGCTCATTCAAGAATAGGATGATGAGTTAGTTCTTGTTTCGATTCGTCACCTTCTCGGC
TTCTCCCCTGTTCTTGAATTTGTAAAAAGGCGGAAAAAAACTTTTGTCCTCCGAAAATGAGTGCTTACACTACAATCTCT
TGGACATTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52072.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis