Browse Element(s) Details

OsAffx.5005.1.S1_at

Description

tigr:9634.m03271
TID=OsAffx.5005.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g34630	10/11	hypothetical protein

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g34570	OsAffx.27937.1.S1_at	11/11	6	+	20105011..20111110	hypothetical protein
LOC_Os06g34570	OsAffx.27937.2.S1_s_at	11/11	6	+	20105011..20111110	hypothetical protein
LOC_Os06g34570	OsAffx.17323.1.S1_at	1/11	6	+	20105011..20111110	hypothetical protein
LOC_Os06g34580	OsAffx.22699.1.S1_x_at	1/11	6	+	20111705..20116213	retrotransposon protein, putative, unclassified
LOC_Os06g34580	OsAffx.8201.1.S1_x_at	1/11	6	+	20111705..20116213	retrotransposon protein, putative, unclassified
LOC_Os06g34590	OsAffx.31829.1.S1_at	11/11	6	+	20117370..20119153	hypothetical protein
LOC_Os06g34600	OsAffx.15923.1.S1_at	1/11	6	+	20120528..20124292	hypothetical protein
LOC_Os06g34600	OsAffx.8794.1.S1_at	1/11	6	+	20120528..20124292	hypothetical protein
LOC_Os06g34610	NA	NA	6	+	20125202..20125871	expressed protein
LOC_Os06g34620	NA	NA	6	+	20130647..20131171	Zinc finger, C3HC4 type family protein
LOC_Os06g34630	OsAffx.5005.1.S1_at	10/11	6	+	20133624..20134277	hypothetical protein
LOC_Os06g34640	NA	NA	6	+	20137223..20137693	Zinc finger, C3HC4 type family protein
LOC_Os06g34650	Os.51533.1.S1_at	11/11	6	+	20142948..20143669	Zinc finger, C3HC4 type family protein, expressed
LOC_Os06g34660	Os.56170.1.S1_at	10/11	6	+	20144121..20147102	glucan endo-1,3-beta-glucosidase 1 precursor, putative, expressed
LOC_Os06g34660	OsAffx.5006.1.S1_at	10/11	6	+	20144121..20147102	glucan endo-1,3-beta-glucosidase 1 precursor, putative, expressed
LOC_Os06g34670	OsAffx.31347.1.S1_at	10/11	6	+	20148014..20149254	hypothetical protein
LOC_Os06g34680	NA	NA	6	+	20149649..20150755	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g34690	Os.12204.1.S1_at	11/11	6	+	20157644..20164610	T-complex protein 1, gamma subunit, putative, expressed

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Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
OsAffx.5005.1.S1_at--757--723	1	Chr06:20134135..20134159 (25 bp)	GTCGCTGCTGGGAGACACCGGCTGC	LOC_Os06g34630
OsAffx.5005.1.S1_at--680--917	1	Chr06:20134113..20134137 (25 bp)	TGCCGCTGCCACAGCTCACGAGAAG	LOC_Os06g34630
OsAffx.5005.1.S1_at--237--479	1	Chr06:20134109..20134133 (25 bp)	GCTGCCACAGCTCACGAGAAGGGAA	LOC_Os06g34630
OsAffx.5005.1.S1_at--378--115	1	Chr06:20134001..20134025 (25 bp)	AGTCTGGGAGGCGTGCGCAGCGGAT	LOC_Os06g34630
OsAffx.5005.1.S1_at--1018--335	1	Chr06:20133723..20134008 (25 bp)	CAGCGGATTCCGAGAAGGTGCTAAT	LOC_Os06g34630
OsAffx.5005.1.S1_at--503--1065	1	NONE	TTCCGAGAAGGTGCTAATGTGGTTT	NONE
OsAffx.5005.1.S1_at--1044--483	1	Chr06:20133704..20133728 (25 bp)	GCTAATGTGGTTTTTAGCCAACCCA	LOC_Os06g34630
OsAffx.5005.1.S1_at--976--259	1	Chr06:20133685..20133709 (25 bp)	AACCCAACAAAGATGATTTTTCTAG	LOC_Os06g34630
OsAffx.5005.1.S1_at--694--685	1	Chr06:20133661..20133685 (25 bp)	GTAGTGATATAACTCCTAAGGCCAT	LOC_Os06g34630
OsAffx.5005.1.S1_at--421--741	1	Chr06:20133658..20133682 (25 bp)	GTGATATAACTCCTAAGGCCATTAA	LOC_Os06g34630
OsAffx.5005.1.S1_at--936--1017	1	Chr06:20133654..20133678 (25 bp)	TATAACTCCTAAGGCCATTAAGAGG	LOC_Os06g34630

Target Sequence

GTCGCTGCTGGGAGACACCGGCTGCCGCTGCCACAGCTCACGAGAAGGGAAGGGGAGGATGGGATCGAAGGAGAGGTAGG
AGGGGATCGGAGGAGGGTGTGAGGAGGGGATCGGAGGATATAAGGGAGAGAGAGAGTCTGGGAGGCGTGCGCAGCGGATT
CCGAGAAGGTGCTAATGTGGTTTTTAGCCAACCCAACAAAGATGATTTTTCTAGTAGTGATATAACTCCTAAGGCCATTA
AGAGG

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis