Browse Element(s) Details


OsAffx.27929.1.S1_at

Description tigr:9634.m03242
TID=OsAffx.27929.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=CAF1 family ribonuclease
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3452011/11CAF1 family ribonuclease containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g34470OsAffx.27933.1.S1_at11/116+20063669..20064172Zinc finger, C3HC4 type family protein
LOC_Os06g34480NANA6+20068816..20072120transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g34490NANA6+20074934..20075926transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g34500NANA6+20076971..20079548transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g34510NANA6+20080452..20083772transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g34520OsAffx.27929.1.S1_at11/116+20084774..20085595CAF1 family ribonuclease containing protein
LOC_Os06g34530NANA6+20087573..20088145Zinc finger, C3HC4 type family protein
LOC_Os06g34540NANA6+20092407..20093057hypothetical protein
LOC_Os06g34550OsAffx.27931.2.S1_at11/116+20093445..20093960hypothetical protein
LOC_Os06g34550OsAffx.27931.2.S1_x_at11/116+20093445..20093960hypothetical protein
LOC_Os06g34560OsAffx.27942.1.S1_at10/116+20097737..20099499Zinc finger, C3HC4 type family protein
LOC_Os06g34564OsAffx.20927.1.S1_x_at9/116+20101691..20103442Myeloid/lymphoid or mixed-lineage leukemia protein 2, putative
LOC_Os06g34564OsAffx.20927.1.S1_at8/116+20101691..20103442Myeloid/lymphoid or mixed-lineage leukemia protein 2, putative
LOC_Os06g34564OsAffx.17778.2.S1_at2/116+20101691..20103442Myeloid/lymphoid or mixed-lineage leukemia protein 2, putative
LOC_Os06g34564OsAffx.29316.1.S1_x_at1/116+20101691..20103442Myeloid/lymphoid or mixed-lineage leukemia protein 2, putative
LOC_Os06g34564OsAffx.14776.1.S1_x_at1/116+20101691..20103442Myeloid/lymphoid or mixed-lineage leukemia protein 2, putative
LOC_Os06g34564OsAffx.6537.1.S1_at1/116+20101691..20103442Myeloid/lymphoid or mixed-lineage leukemia protein 2, putative
LOC_Os06g34570OsAffx.27937.1.S1_at11/116+20105011..20111110hypothetical protein
LOC_Os06g34570OsAffx.27937.2.S1_s_at11/116+20105011..20111110hypothetical protein
LOC_Os06g34570OsAffx.17323.1.S1_at1/116+20105011..20111110hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009451biological_processRNA modification
GO:0004540molecular_functionribonuclease activity
Probe Info

Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27929.1.S1_at--449--10651Chr06:20085038..20085062 (25 bp)
TTCGCCTGGGAGTTCAACCTGAACG
LOC_Os06g34520
OsAffx.27929.1.S1_at--276--6751Chr06:20085049..20085073 (25 bp)
GTTCAACCTGAACGAGTTCGACCTC
LOC_Os06g34520
OsAffx.27929.1.S1_at--432--9891Chr06:20085257..20085281 (25 bp)
TACTTCGCCAGGATCTTGATGCTCG
LOC_Os06g34520
OsAffx.27929.1.S1_at--1003--4411Chr06:20085263..20085287 (25 bp)
GCCAGGATCTTGATGCTCGCCGTCG
LOC_Os06g34520
OsAffx.27929.1.S1_at--125--9391Chr06:20085348..20085372 (25 bp)
TCGAGGAGATGGTCCGCTCGCTGCT
LOC_Os06g34520
OsAffx.27929.1.S1_at--835--7591Chr06:20085374..20085398 (25 bp)
GGGCATCACGTGTACGACGTCAGGT
LOC_Os06g34520
OsAffx.27929.1.S1_at--107--3331Chr06:20085380..20085404 (25 bp)
CACGTGTACGACGTCAGGTTGCTGG
LOC_Os06g34520
OsAffx.27929.1.S1_at--1052--4791Chr06:20085424..20085448 (25 bp)
GCTCGCCGACGTTGCGAGGCAGCTC
LOC_Os06g34520
OsAffx.27929.1.S1_at--795--9631Chr06:20085504..20085528 (25 bp)
TCATGGCGCTGCAGGCTTTCGAAGC
LOC_Os06g34520
OsAffx.27929.1.S1_at--985--4871Chr06:20085518..20085542 (25 bp)
GCTTTCGAAGCCCTGAGGGAGCAAT
LOC_Os06g34520
OsAffx.27929.1.S1_at--38--3031Chr06:20085540..20085564 (25 bp)
AATGCCGCGGCGTGATGCCTCATCG
LOC_Os06g34520
Target Sequence
TTCGCCTGGGAGTTCAACCTGAACGAGTTCGACCTCGCCGCCGACGGCGACATGTGCGAGCCGGGCTCCGTCGACTACCT
CCGCCACCGCGGCATGGACTTCAACGCCCTCCCATGGTCGGGCGTCGGCGCCGCCAGCCTCGGCCGCCTGCTCTGGAGCT
CCGGCCTCCTCGCCGCGCGGCCGTCGTGGGCCACCTTCGCCGGGGCCTACCACGTCGCCTACTTCGCCAGGATCTTGATG
CTCGCCGTCGCCGTCGCCGGCACCGGCGGCGGCGGGGCGGCGAGGCGGCTCCCCGCCGACGTCGGGGGATTCGAGGAGAT
GGTCCGCTCGCTGCTGGGGCATCACGTGTACGACGTCAGGTTGCTGGCCGGGGAGCTCAGGGGCCCGCTCGCCGACGTTG
CGAGGCAGCTCGGCGCCGCTGTCCCAGCCGACGCGGCCGCCGCGGGGCTCGCCGGCGCCGGCGCCCTCATGGCGCTGCAG
GCTTTCGAAGCCCTGAGGGAGCAATGCCGCGGCGTGATGCCTCATCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27929.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis