Browse Element(s) Details


OsAffx.27933.1.S1_at

Description tigr:9634.m03250
TID=OsAffx.27933.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Zinc finger, C3HC4 type (RING finger), putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3447011/11Zinc finger, C3HC4 type family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g34440Os.14566.1.S1_at11/116+20033669..20041687DnaJ domain containing protein, expressed
LOC_Os06g34450Os.5874.1.S1_at11/116+20050306..20051375Zinc finger, C3HC4 type family protein, expressed
LOC_Os06g34460OsAffx.15735.1.S1_at10/116+20054856..20056256hypothetical protein
LOC_Os06g34470OsAffx.27933.1.S1_at11/116+20063669..20064172Zinc finger, C3HC4 type family protein
LOC_Os06g34480NANA6+20068816..20072120transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g34490NANA6+20074934..20075926transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g34500NANA6+20076971..20079548transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g34510NANA6+20080452..20083772transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g34520OsAffx.27929.1.S1_at11/116+20084774..20085595CAF1 family ribonuclease containing protein
LOC_Os06g34530NANA6+20087573..20088145Zinc finger, C3HC4 type family protein

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27933.1.S1_at--593--9491Chr06:20063730..20063754 (25 bp)
TCTGCCTCCAGCTATCGGCCAGGGA
LOC_Os06g34470
OsAffx.27933.1.S1_at--264--3391Chr06:20063738..20063762 (25 bp)
CAGCTATCGGCCAGGGACAACGCCG
LOC_Os06g34470
OsAffx.27933.1.S1_at--133--4131Chr06:20063791..20063815 (25 bp)
CGCAGGCCCAGCTCAAACAGCTGAT
LOC_Os06g34470
OsAffx.27933.1.S1_at--826--1571Chr06:20063800..20063824 (25 bp)
AGCTCAAACAGCTGATCTCCCGCTG
LOC_Os06g34470
OsAffx.27933.1.S1_at--1048--1451Chr06:20063860..20063884 (25 bp)
AGAAGGTGATCTGCGTGGGCTTGGC
LOC_Os06g34470
OsAffx.27933.1.S1_at--841--471Chr06:20063868..20063892 (25 bp)
ATCTGCGTGGGCTTGGCGCGTCGTC
LOC_Os06g34470
OsAffx.27933.1.S1_at--441--4011Chr06:20063914..20063938 (25 bp)
CGTCCTGCCGGCGTACGCGTGGAGG
LOC_Os06g34470
OsAffx.27933.1.S1_at--412--8811Chr06:20064045..20064069 (25 bp)
TGTTCCACGCGAGGTGCATCGACAA
LOC_Os06g34470
OsAffx.27933.1.S1_at--1088--511Chr06:20064062..20064086 (25 bp)
ATCGACAAGTGGCTGATCACGTCGC
LOC_Os06g34470
OsAffx.27933.1.S1_at--1084--2211Chr06:20064066..20064090 (25 bp)
ACAAGTGGCTGATCACGTCGCAGGG
LOC_Os06g34470
OsAffx.27933.1.S1_at--611--7712Chr06:20064090..20064114 (25 bp)
GGACTTGCCCGGTGTGCCGGACTCC
LOC_Os06g34470
Target Sequence 
TCTGCCTCCAGCTATCGGCCAGGGACAACGCCGTCGATGGCGCCGCCGCCGCCGCCGCTGCCGCAGGCCCAGCTCAAACA
GCTGATCTCCCGCTGCAACAGCCGGCGGCGCTCCCGCGCGAGGCGCCCGCAGAAGGTGATCTGCGTGGGCTTGGCGCGTC
GTCGTCGCCGGTCTTCGTCGTCGCCGTCCTGCCGGCGTACGCGTGGAGGAAGAAGGCCGCCGTCGACGGCGACGACGGGG
ACGGCGAGTGCGCGATCTGCCTCGGCGAGGTGCGGCGAGGGCAGGTGGTGAAGCAGCTGCCGGCGTGCACGCACCTGTTC
CACGCGAGGTGCATCGACAAGTGGCTGATCACGTCGCAGGGGACTTGCCCGGTGTGCCGGACTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27933.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis