Browse Element(s) Details


Os.5874.1.S1_at

Description gb:AK066960.1
DB_XREF= gi:32976978
TID=Os.5874.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.5874 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013091H18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013091H18, full insert sequence.
FL= gb:AK066960.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3445011/11Zinc finger, C3HC4 type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g34420OsAffx.15736.1.S1_at11/116+20024975..20030158DEAD/DEAH box helicase family protein
LOC_Os06g34430Os.56371.1.S1_at10/116+20032289..20033346Zinc finger, C3HC4 type family protein, expressed
LOC_Os06g34440Os.14566.1.S1_at11/116+20033669..20041687DnaJ domain containing protein, expressed
LOC_Os06g34450Os.5874.1.S1_at11/116+20050306..20051375Zinc finger, C3HC4 type family protein, expressed
LOC_Os06g34460OsAffx.15735.1.S1_at10/116+20054856..20056256hypothetical protein
LOC_Os06g34470OsAffx.27933.1.S1_at11/116+20063669..20064172Zinc finger, C3HC4 type family protein
LOC_Os06g34480NANA6+20068816..20072120transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g34490NANA6+20074934..20075926transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5874.1.S1_at--1062--4491Chr06:20050937..20050961 (25 bp)
GCCGAGGACAAGTGCTGCGTCTGCC
LOC_Os06g34450
Os.5874.1.S1_at--56--2871Chr06:20051027..20051051 (25 bp)
AAGTGCATCGGCAAGTGGCTCACGG
LOC_Os06g34450
Os.5874.1.S1_at--153--8231Chr06:20051036..20051060 (25 bp)
GGCAAGTGGCTCACGGCGCACCCGA
LOC_Os06g34450
Os.5874.1.S1_at--743--9991Chr06:20051150..20051174 (25 bp)
TAGCTCTGCACATAGTCTGACAGAC
LOC_Os06g34450
Os.5874.1.S1_at--241--10071Chr06:20051162..20051186 (25 bp)
TAGTCTGACAGACAAACTCAGGTAA
LOC_Os06g34450
Os.5874.1.S1_at--688--2011Chr06:20051177..20051201 (25 bp)
ACTCAGGTAAATTAATTTCTTGTGC
LOC_Os06g34450
Os.5874.1.S1_at--216--3131Chr06:20051190..20051214 (25 bp)
AATTTCTTGTGCTATTAATCTGTAA
LOC_Os06g34450
Os.5874.1.S1_at--147--311Chr06:20051259..20051283 (25 bp)
ATAGCTGTATGAATGAATTGCCTCC
LOC_Os06g34450
Os.5874.1.S1_at--48--3171Chr06:20051274..20051298 (25 bp)
AATTGCCTCCAATTTTTCATGCATC
LOC_Os06g34450
Os.5874.1.S1_at--544--6931Chr06:20051320..20051344 (25 bp)
GTAGTAATCTGTAAATTCTTTTGTA
LOC_Os06g34450
Os.5874.1.S1_at--149--3151Chr06:20051333..20051357 (25 bp)
AATTCTTTTGTAACATTGCTCTATG
LOC_Os06g34450
Target Sequence 
GCCGAGGACAAGTGCTGCGTCTGCCTCNCCGGGATGCGGGAGGCGCAGGCGCTCCGCGACCTCCCCCGGTGCGGTCACCG
CTTCCACGCCAAGTGCATCGGCAAGTGGCTCACGGCGCACCCGACGTGCCCCGTCTGCCGCACCACGGCCGTGCCGCCGC
CGGCGCCGCTGCCCGCCAGCGGCGACCATGCNGANGACGCCATCACCCCTGTNTAGCTCTGCACATAGTCTGACAGACAA
ACTCAGGTAAATTAATTTCTTGTGCTATTAATCTGTAAAATTGTTGGGAAATTTTTTTCTTGAAGATGTTGTATATAGAT
ATATAGCTGTATGAATGAATTGCCTCCAATTTTTCATGCATCAATTGGAAAGAATGGTAAGTAGTAGTAATCTGTAAATT
CTTTTGTAACATTGCTCTATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5874.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis