Browse Element(s) Details


OsAffx.15736.1.S1_at

Description tigr:9634.m03255
TID=OsAffx.15736.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=DEADDEAH box helicase, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3442011/11DEAD/DEAH box helicase family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g34370NANA6+20005381..20006739transposon protein, putative, Pong sub-class
LOC_Os06g34380OsAffx.11235.1.S1_at1/116+20007349..20008578transposon protein, putative, Pong sub-class
LOC_Os06g34390Os.50309.1.S1_at11/116+20009531..20011039Zinc finger, C3HC4 type family protein, expressed
LOC_Os06g34400OsAffx.15738.1.S1_at10/116+20018208..20020124Zinc finger, C3HC4 type family protein, expressed
LOC_Os06g34410OsAffx.15737.1.S1_at11/116+20024004..20024330hypothetical protein
LOC_Os06g34420OsAffx.15736.1.S1_at11/116+20024975..20030158DEAD/DEAH box helicase family protein
LOC_Os06g34430Os.56371.1.S1_at10/116+20032289..20033346Zinc finger, C3HC4 type family protein, expressed
LOC_Os06g34440Os.14566.1.S1_at11/116+20033669..20041687DnaJ domain containing protein, expressed
LOC_Os06g34450Os.5874.1.S1_at11/116+20050306..20051375Zinc finger, C3HC4 type family protein, expressed
LOC_Os06g34460OsAffx.15735.1.S1_at10/116+20054856..20056256hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0008026molecular_functionATP-dependent helicase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15736.1.S1_at--119--5971Chr06:20028269..20028293 (25 bp)
GAGAAGGTTTCTGGTTCTGTATGCT
LOC_Os06g34420
OsAffx.15736.1.S1_at--415--1211Chr06:20028751..20028775 (25 bp)
AGTTGGTCGTACTGCCCGTGGCGAT
LOC_Os06g34420
OsAffx.15736.1.S1_at--696--5211Chr06:20028815..20028839 (25 bp)
GAATTACAGTTGCTCATTCACCTGA
LOC_Os06g34420
OsAffx.15736.1.S1_at--216--8991Chr06:20029341..20029420 (25 bp)
TGCAACCTTACCTTCATTATGACTC
LOC_Os06g34420
OsAffx.15736.1.S1_at--796--5211Chr06:20029451..20029475 (25 bp)
GAATTACATCCTAAACAGATCGGCG
LOC_Os06g34420
OsAffx.15736.1.S1_at--1042--5411Chr06:20029479..20029503 (25 bp)
GAAGCCTACAAATCCTATCTTTTGG
LOC_Os06g34420
OsAffx.15736.1.S1_at--1114--5671Chr06:20029527..20029551 (25 bp)
GACATTTTTGCTATCCATCAACTTG
LOC_Os06g34420
OsAffx.15736.1.S1_at--1028--191Chr06:20029552..20029995 (25 bp)
ATTTGACGAGCGTAGCGGCTTCGTT
LOC_Os06g34420
OsAffx.15736.1.S1_at--929--9391Chr06:20029991..20030015 (25 bp)
TCGTTCTGTTTTAGTGAGCCTCCAA
LOC_Os06g34420
OsAffx.15736.1.S1_at--349--6011Chr06:20030033..20030057 (25 bp)
GAGAGCAGTGCGTCAAAACATCGAA
LOC_Os06g34420
OsAffx.15736.1.S1_at--759--8011Chr06:20030082..20030106 (25 bp)
GGAGGCATGGTATCGGCCCTTCAAA
LOC_Os06g34420
Target Sequence 
GAGAAGGTTTCTGGTTCTGTATGCTTTCCTAAAAAAGGCACTTTCTGAGAAGACGAAGGACTATATTGTGCAATATGATC
CTCCAGATGAAACAAAGGATTACATTCACAGAGTTGGTCGTACTGCCCGTGGCGATAATGGCAAAGGAAGTGCAATACTG
TTCTTACTACCGAAAGAATTACAGTTGCTCATTCACCTGAAAGCAGCTAATATTTCTGTATCTGAATATGTGTTCAGACA
AGAGCTTGTGCCAAAATTGCAACCTTACCTTCATTATGACTCAAGTTTTGAGCAGGAGAAAATTGTTGGTGGGAATTACA
TCCTAAACAGATCGGCGAAAGAAGCCTACAAATCCTATCTTTTGGCATACAAATCACACTCTATGAAAGACATTTTTGCT
ATCCATCAACTTGATTTGACGAGCGTAGCGGCTTCGTTCTGTTTTAGTGAGCCTCCAAAGGTGAATCTGGACCTGGAGAG
CAGTGCGTCAAAACATCGAAAGAAGAGGAATGTAAACACTGGCAGGAGGCATGGTATCGGCCCTTCAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15736.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis