Browse Element(s) Details


OsAffx.11235.1.S1_at

Description tigr:9629.m02667
TID=OsAffx.11235.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g315102/11transposon protein, putative, Pong sub-class
LOC_Os06g343801/11transposon protein, putative, Pong sub-class
LOC_Os07g387801/11transposon protein, putative, Pong sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g31480Os.20871.1.S1_s_at11/1111+17888761..17896784expressed protein
LOC_Os11g31480OsAffx.31245.1.S1_at9/1111+17888761..17896784expressed protein
LOC_Os11g31490NANA11+17897682..17900108retrotransposon protein, putative, unclassified
LOC_Os11g31500OsAffx.31246.1.S1_at11/1111+17907015..17913821hypothetical protein
LOC_Os11g31510OsAffx.11235.1.S1_at2/1111+17914325..17915554transposon protein, putative, Pong sub-class
LOC_Os11g31520NANA11+17916308..17917784transposon protein, putative, Pong sub-class, expressed
LOC_Os11g31530OsAffx.19103.1.S1_at10/1111+17923442..17925472BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative
LOC_Os11g31540OsAffx.19104.1.S1_at11/1111+17927946..17929837BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed
LOC_Os11g31550OsAffx.31247.1.S1_at10/1111+17932830..17935422Leucine Rich Repeat family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11235.1.S1_at--852--6211Chr01:15900234..15900258 (25 bp)
GAGGCGAAGCGCTTTTATTCCCTTT
NONE
OsAffx.11235.1.S1_at--344--10211Chr01:15900249..15900273 (25 bp)
TATTCCCTTTTCGTCGCGAGAGAAA
NONE
OsAffx.11235.1.S1_at--578--8431NONE
TGGCGGTCGGTTTGCTATACAGAGT
NONE
OsAffx.11235.1.S1_at--1146--7851NONE
GGTTTGCTATACAGAGTCCTTGAAG
NONE
OsAffx.11235.1.S1_at--742--7254Chr11:17915180..17915204 (25 bp)
GTCCTTGAAGAGAGTAGCCATAATA
LOC_Os11g31510
OsAffx.11235.1.S1_at--895--9632Chr01:15902050..15902074 (25 bp)
TCAGGAGCATATACTTCATCATCGA
NONE
OsAffx.11235.1.S1_at--121--5891Chr01:15902098..15902122 (25 bp)
GAGCGCAAAGAGAAGTGCCTTGAGA
NONE
OsAffx.11235.1.S1_at--217--931Chr01:15902151..15902175 (25 bp)
AGGAAAAGGTGCTCCATCAACTTTG
NONE
OsAffx.11235.1.S1_at--430--3112Chr11:17915369..17915393 (25 bp)
AATATGGTTCTCTTTCATGAAGCTA
LOC_Os11g31510
OsAffx.11235.1.S1_at--197--3411Chr01:15902231..15902255 (25 bp)
CAGCAACATTGCTAAAGGCCGCAGA
NONE
OsAffx.11235.1.S1_at--646--9831Chr01:15902243..15902267 (25 bp)
TAAAGGCCGCAGAAGCAACACTGAT
NONE
Target Sequence 
GAGGCGAAGCGCTTTTATTCCCTTTTCGTCGCGAGAGAAAATTGAGAATTTCGGTGGTGGTGCGGCGGTGGCGGTCGGTT
TGCTATACAGAGTCCTTGAAGAGAGTAGCCATAATAAGAGGAACAAGATTTCTGAATCAGGAGCATATACTTCATCATCG
AACCAAGAAATAGAGGAGAAAACAGAGCGCAAAGAGAAGTGCCTTGAGAGGCAAAAGGCAGCAAAACAGAGGAAAAAAGG
AAAAGGTGCTCCATCAACTTTGGGGGACAAGCCAAGTCAAAATATGGTTCTCTTTCATGAAGCTATTACAACTAAAGCAG
CAACATTGCTAAAGGCCGCAGAAGCAACACTGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11235.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis