Browse Element(s) Details


Os.20871.1.S1_s_at

Description gb:BQ906981
DB_XREF= gi:22305759
DB_XREF=M023C03
CLONE=M023C03
TID=Os.20871.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.20871 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3148011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g31440OsAffx.4416.1.S1_at1/1111+17867691..17869536hypothetical protein
LOC_Os11g31450Os.53055.1.S1_at11/1111+17870111..17876131expressed protein
LOC_Os11g31450OsAffx.13914.1.S1_at1/1111+17870111..17876131expressed protein
LOC_Os11g31460NANA11+17877455..17878644retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g31470Os.10185.1.S1_at11/1111+17879333..17887731expressed protein
LOC_Os11g31470Os.57435.1.S1_x_at2/1111+17879333..17887731expressed protein
LOC_Os11g31480Os.20871.1.S1_s_at11/1111+17888761..17896784expressed protein
LOC_Os11g31480OsAffx.31245.1.S1_at9/1111+17888761..17896784expressed protein
LOC_Os11g31490NANA11+17897682..17900108retrotransposon protein, putative, unclassified
LOC_Os11g31500OsAffx.31246.1.S1_at11/1111+17907015..17913821hypothetical protein
LOC_Os11g31510OsAffx.11235.1.S1_at2/1111+17914325..17915554transposon protein, putative, Pong sub-class
LOC_Os11g31520NANA11+17916308..17917784transposon protein, putative, Pong sub-class, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20871.1.S1_s_at--395--6591Chr11:17889465..17889489 (25 bp)
GATTGCTCTTTGAGATGGCAGATCA
LOC_Os11g31480
Os.20871.1.S1_s_at--103--10511Chr11:17889434..17889458 (25 bp)
TTCACTTGCCGAGCTCGTAAAAGTT
LOC_Os11g31480
Os.20871.1.S1_s_at--1000--1231Chr11:17889413..17889437 (25 bp)
AGTTGGCAGCTTACTGGACTTCCAG
LOC_Os11g31480
Os.20871.1.S1_s_at--265--6351Chr11:17889388..17889412 (25 bp)
GATGCTGCTGTTGATTTCCTGCTCA
LOC_Os11g31480
Os.20871.1.S1_s_at--445--2731Chr11:17889358..17889382 (25 bp)
AAGAATTTGCAGCTGTTCCCTGAAG
LOC_Os11g31480
Os.20871.1.S1_s_at--487--1611Chr11:17889348..17889372 (25 bp)
AGCTGTTCCCTGAAGATGAGGCTTT
LOC_Os11g31480
Os.20871.1.S1_s_at--196--711Chr11:17889333..17889357 (25 bp)
ATGAGGCTTTCCTGAAGGCTTCTCT
LOC_Os11g31480
Os.20871.1.S1_s_at--457--431Chr11:17889178..17889202 (25 bp)
ATCATTCTTCTTCGCTTGTTGGTGT
LOC_Os11g31480
Os.20871.1.S1_s_at--286--5291Chr11:17888932..17888956 (25 bp)
GAATGGGACTTTTGGTCTCTTCAGA
LOC_Os11g31480
Os.20871.1.S1_s_at--322--7271Chr11:17888846..17888870 (25 bp)
GTCCTTCTGGACCTGAACATGTGTG
LOC_Os11g31480
Os.20871.1.S1_s_at--889--1131Chr11:17888796..17888820 (25 bp)
AGTGCGCTTATTAACATCTCTATGA
LOC_Os11g31480
Target Sequence 
GATTGCTCTTTGAGATGGCAGATCAGATACCGTTCACTTGCCGAGCTCGTAAAAGTTGGCAGCTTACTGGACTTCCAGGA
TGCTGCTGTTGATTTCCTGCTCAAGTCAAAGAATTTGCAGCTGTTCCCTGAAGATGAGGCTTTCCTGAAGGCTTCTCTGC
AAGATGGTGGTGAGGACTGTTAGTGGTATTCAGATCATTCTTCTTCGCTTGTTGGTGTGGTTGCTAAACCGGTTGAAGAT
GGCAAGTAAGATGATGGTGCTTTGCATCTGGAGGACCCTCCTGAATGGGACTTTTGGTCTCTTCAGATAAGATANGCTGC
TACTAGTATTAAGCTGTTATATATTTCTTGTCTGTAATGTGAGGCTTCGTCCTTCTGGACCTGAACATGTGTGTGGTTTA
AGTGTGGATGTTTAATTAAGTGCGCTTATTAACATCTCTATGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20871.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis