Browse Element(s) Details


Os.10185.1.S1_at

Description gb:AK101049.1
DB_XREF= gi:32986258
TID=Os.10185.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.10185 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033009I14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033009I14, full insert sequence.
FL= gb:AK101049.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3147011/11expressed protein
LOC_Os11g314305/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g31430Os.57435.1.S1_x_at11/1111+17847752..17861778expressed protein
LOC_Os11g31430Os.9446.1.S1_at11/1111+17847752..17861778expressed protein
LOC_Os11g31430OsAffx.19102.1.S1_at10/1111+17847752..17861778expressed protein
LOC_Os11g31430Os.10185.1.S1_at5/1111+17847752..17861778expressed protein
LOC_Os11g31430OsAffx.21108.1.S1_x_at1/1111+17847752..17861778expressed protein
LOC_Os11g31440OsAffx.4416.1.S1_at1/1111+17867691..17869536hypothetical protein
LOC_Os11g31450Os.53055.1.S1_at11/1111+17870111..17876131expressed protein
LOC_Os11g31450OsAffx.13914.1.S1_at1/1111+17870111..17876131expressed protein
LOC_Os11g31460NANA11+17877455..17878644retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g31470Os.10185.1.S1_at11/1111+17879333..17887731expressed protein
LOC_Os11g31470Os.57435.1.S1_x_at2/1111+17879333..17887731expressed protein
LOC_Os11g31480Os.20871.1.S1_s_at11/1111+17888761..17896784expressed protein
LOC_Os11g31480OsAffx.31245.1.S1_at9/1111+17888761..17896784expressed protein
LOC_Os11g31490NANA11+17897682..17900108retrotransposon protein, putative, unclassified
LOC_Os11g31500OsAffx.31246.1.S1_at11/1111+17907015..17913821hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0009910biological_processnegative regulation of flower development
GO:0009944biological_processpolarity specification of adaxial/abaxial axis
GO:0009965biological_processleaf morphogenesis
GO:0035281biological_processpre-microRNA export from nucleus
GO:0048364biological_processroot development
GO:0048367biological_processshoot development
GO:0005635cellular_componentnuclear envelope
GO:0005487molecular_functionnucleocytoplasmic transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10185.1.S1_at--596--5151Chr11:17887395..17887419 (25 bp)
GCAACGGAGAATTCACCGCCGGAAT
LOC_Os11g31470
Os.10185.1.S1_at--981--9651Chr11:17887407..17887431 (25 bp)
TCACCGCCGGAATGAACTAGACTTG
LOC_Os11g31470
Os.10185.1.S1_at--651--5672Chr11:17887426..17887450 (25 bp)
GACTTGGCTCAAGACTGCTGCAACA
LOC_Os11g31470
Os.10185.1.S1_at--1073--5712Chr11:17887438..17887462 (25 bp)
GACTGCTGCAACACGAAATCAAGGA
LOC_Os11g31470
Os.10185.1.S1_at--320--6092Chr11:17887461..17887485 (25 bp)
GAGTACCTGTCTGTCAATCTTCTAG
LOC_Os11g31470
Os.10185.1.S1_at--20--9551Chr11:17887481..17887505 (25 bp)
TCTAGGACTCTAGGGCGACAATAGT
LOC_Os11g31470
Os.10185.1.S1_at--361--2831Chr11:17887515..17887539 (25 bp)
AAGTTATCAACCAAACCTCCATGGT
LOC_Os11g31470
Os.10185.1.S1_at--1106--3431Chr11:17887542..17887566 (25 bp)
CAGTCTCGCACACCAAGTTTTGTGA
LOC_Os11g31470
Os.10185.1.S1_at--489--5891Chr11:17887584..17887608 (25 bp)
GAGCTGGATGCTTTTGATTAATCAA
LOC_Os11g31470
Os.10185.1.S1_at--1076--6552Chr11:17887599..17887623 (25 bp)
GATTAATCAAGTCCACCTGTACCAC
LOC_Os11g31470
Os.10185.1.S1_at--931--6972Chr11:17887617..17887641 (25 bp)
GTACCACAAACACACTTGCACATGT
LOC_Os11g31470
Target Sequence 
GCAACGGAGAATTCACCGCCGGAATGAACTAGACTTGGCTCAAGACTGCTGCAACACGAAATCAAGGAGTACCTGTCTGT
CAATCTTCTAGGACTCTAGGGCGACAATAGTAGGCATACAAAGTTATCAACCAAACCTCCATGGTTCCAGTCTCGCACAC
CAAGTTTTGTGATCACCTGGAATTAAGCAGAGCTGGATGCTTTTGATTAATCAAGTCCACCTGTACCACAAACACACTTG
CACATGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10185.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis