Browse Element(s) Details


Os.53055.1.S1_at

Description gb:AK070622.1
DB_XREF= gi:32980646
TID=Os.53055.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53055 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023059G14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023059G14, full insert sequence.
FL= gb:AK070622.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3145011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g31430Os.57435.1.S1_x_at11/1111+17847752..17861778expressed protein
LOC_Os11g31430Os.9446.1.S1_at11/1111+17847752..17861778expressed protein
LOC_Os11g31430OsAffx.19102.1.S1_at10/1111+17847752..17861778expressed protein
LOC_Os11g31430Os.10185.1.S1_at5/1111+17847752..17861778expressed protein
LOC_Os11g31430OsAffx.21108.1.S1_x_at1/1111+17847752..17861778expressed protein
LOC_Os11g31440OsAffx.4416.1.S1_at1/1111+17867691..17869536hypothetical protein
LOC_Os11g31450Os.53055.1.S1_at11/1111+17870111..17876131expressed protein
LOC_Os11g31450OsAffx.13914.1.S1_at1/1111+17870111..17876131expressed protein
LOC_Os11g31460NANA11+17877455..17878644retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g31470Os.10185.1.S1_at11/1111+17879333..17887731expressed protein
LOC_Os11g31470Os.57435.1.S1_x_at2/1111+17879333..17887731expressed protein
LOC_Os11g31480Os.20871.1.S1_s_at11/1111+17888761..17896784expressed protein
LOC_Os11g31480OsAffx.31245.1.S1_at9/1111+17888761..17896784expressed protein
LOC_Os11g31490NANA11+17897682..17900108retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53055.1.S1_at--278--7911Chr11:17870829..17870853 (25 bp)
GGTTGCTTATGATAGAACGCCCTGA
LOC_Os11g31450
Os.53055.1.S1_at--1129--2591Chr11:17870814..17870838 (25 bp)
AACGCCCTGAATACATGGTGACACT
LOC_Os11g31450
Os.53055.1.S1_at--526--7771Chr11:17870798..17870822 (25 bp)
GGTGACACTCATTTCAGCAATACGG
LOC_Os11g31450
Os.53055.1.S1_at--756--10091Chr11:17870762..17870783 (22 bp)
TAGGCAATCTCCATTTTGCGCATGG
LOC_Os11g31450
Os.53055.1.S1_at--965--2851Chr11:17870492..17870641 (25 bp)
AAGTGCTTGCTATCTCTTAGGAGGA
LOC_Os11g31450
Os.53055.1.S1_at--436--31Chr11:17870468..17870492 (25 bp)
ATTGGGATCCCATGCAGTTTGAACA
LOC_Os11g31450
Os.53055.1.S1_at--638--2951Chr11:17870389..17870413 (25 bp)
AATGGCCCGGATTTAGTAGCAGTAC
LOC_Os11g31450
Os.53055.1.S1_at--1112--1171Chr11:17870369..17870393 (25 bp)
AGTACTGTTTGTTAGCACTTGCTAC
LOC_Os11g31450
Os.53055.1.S1_at--1083--772Chr11:17870341..17870365 (25 bp)
ATGTGCTACAGGATTCATCTGCTAC
LOC_Os11g31450
Os.53055.1.S1_at--1038--7451Chr11:17870293..17870317 (25 bp)
GTGTGATCTGAGTCCTTGTTATTTG
LOC_Os11g31450
Os.53055.1.S1_at--805--10791Chr11:17870180..17870204 (25 bp)
TTGTACTTCTTAGTTACTCCCTCCG
LOC_Os11g31450
Target Sequence 
GGTTGCTTATGATAGAACGCCCTGAATACATGGTGACACTCATTTCAGCAATACGGAAGTTAGGCTGGATTAGGCAATCT
CCATTTTGCGCATGGATAACCAGTACATGATAGAGTTTTACACCCCAAATCCTGCAAAGTGCTTGCTATCTCTTAGGAGG
ATTGGGATCCCATGCAGTTTGAACAGGGACTGCAAGTTTAGCAGTCTTAGGTATTCACTACCATCAGATCAAAGGTTTCA
ATGGCCCGGATTTAGTAGCAGTACTGTTTGTTAGCACTTGCTACAGTATGTGCTACAGGATTCATCTGCTACAGTACCTG
ATGAACAGTATTTTTGTGTGATCTGAGTCCTTGTTATTTGATCCAACAATGATTGTATGACTTGCTGAGGAAAAAAAATT
GGTAGATGGCAAAGTTTCAACATGCATCTTGCAGTAGCTACATGGAGGTTGTACTTCTTAGTTACTCCCTCCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53055.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis