Browse Element(s) Details


Os.56371.1.S1_at

Description gb:AK109943.1
DB_XREF= gi:32995152
TID=Os.56371.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56371 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-154-F07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-154-F07, full insert sequence.
FL= gb:AK109943.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3443010/11Zinc finger, C3HC4 type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g34380OsAffx.11235.1.S1_at1/116+20007349..20008578transposon protein, putative, Pong sub-class
LOC_Os06g34390Os.50309.1.S1_at11/116+20009531..20011039Zinc finger, C3HC4 type family protein, expressed
LOC_Os06g34400OsAffx.15738.1.S1_at10/116+20018208..20020124Zinc finger, C3HC4 type family protein, expressed
LOC_Os06g34410OsAffx.15737.1.S1_at11/116+20024004..20024330hypothetical protein
LOC_Os06g34420OsAffx.15736.1.S1_at11/116+20024975..20030158DEAD/DEAH box helicase family protein
LOC_Os06g34430Os.56371.1.S1_at10/116+20032289..20033346Zinc finger, C3HC4 type family protein, expressed
LOC_Os06g34440Os.14566.1.S1_at11/116+20033669..20041687DnaJ domain containing protein, expressed
LOC_Os06g34450Os.5874.1.S1_at11/116+20050306..20051375Zinc finger, C3HC4 type family protein, expressed
LOC_Os06g34460OsAffx.15735.1.S1_at10/116+20054856..20056256hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56371.1.S1_at--785--3951Chr06:20032462..20032486 (25 bp)
CGGTGTAGCTCGTCGTACTTCCTGT
LOC_Os06g34430
Os.56371.1.S1_at--306--10011Chr06:20032457..20032481 (25 bp)
TAGCTCGTCGTACTTCCTGTGTCTT
LOC_Os06g34430
Os.56371.1.S1_at--267--7451Chr06:20032439..20032463 (25 bp)
GTGTCTTCCTCCTAGTGATGCAGAA
LOC_Os06g34430
Os.56371.1.S1_at--766--6551Chr06:20032366..20032390 (25 bp)
GATTAGAGGTACAATAGGCCAGTTT
LOC_Os06g34430
Os.56371.1.S1_at--972--3091Chr06:20032354..20032378 (25 bp)
AATAGGCCAGTTTTTCTTGCCACTC
LOC_Os06g34430
Os.56371.1.S1_at--490--10691Chr06:20032338..20032362 (25 bp)
TTGCCACTCTGCTTATTCTGCTGTT
LOC_Os06g34430
Os.56371.1.S1_at--639--3771Chr06:20032332..20032356 (25 bp)
CTCTGCTTATTCTGCTGTTTGTAGA
LOC_Os06g34430
Os.56371.1.S1_at--79--6871Chr06:20032316..20032340 (25 bp)
GTTTGTAGATGCTAACGCGACTCAT
LOC_Os06g34430
Os.56371.1.S1_at--413--631Chr06:20032308..20032332 (25 bp)
ATGCTAACGCGACTCATCTTTGTGA
LOC_Os06g34430
Os.56371.1.S1_at--616--1831Chr06:20032302..20032326 (25 bp)
ACGCGACTCATCTTTGTGAAATCTG
LOC_Os06g34430
Os.56371.1.S1_at--618--10831Chr06:20032289..20032313 (25 bp)
TTGTGAAATCTGAAGCCTGTCGCAT
NONE
Target Sequence 
CGGTGTAGCTCGTCGTACTTCCTGTGTCTTCCTCCTAGTGATGCAGAAGATTGCAGAATGGCAGACAAAATTTGTCAAAT
TTGTACTACATGTTTAGATTAGAGGTACAATAGGCCAGTTTTTCTTGCCACTCTGCTTATTCTGCTGTTTGTAGATGCTA
ACGCGACTCATCTTTGTGAAATCTGAAGCCTGTCGCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56371.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis