Browse Element(s) Details


Os.14566.1.S1_at

Description gb:AK070898.1
DB_XREF= gi:32980921
TID=Os.14566.1
CNT=14
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.14566 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023071K08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023071K08, full insert sequence.
FL= gb:AK070898.1 gb:AK059642.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3444011/11DnaJ domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g34390Os.50309.1.S1_at11/116+20009531..20011039Zinc finger, C3HC4 type family protein, expressed
LOC_Os06g34400OsAffx.15738.1.S1_at10/116+20018208..20020124Zinc finger, C3HC4 type family protein, expressed
LOC_Os06g34410OsAffx.15737.1.S1_at11/116+20024004..20024330hypothetical protein
LOC_Os06g34420OsAffx.15736.1.S1_at11/116+20024975..20030158DEAD/DEAH box helicase family protein
LOC_Os06g34430Os.56371.1.S1_at10/116+20032289..20033346Zinc finger, C3HC4 type family protein, expressed
LOC_Os06g34440Os.14566.1.S1_at11/116+20033669..20041687DnaJ domain containing protein, expressed
LOC_Os06g34450Os.5874.1.S1_at11/116+20050306..20051375Zinc finger, C3HC4 type family protein, expressed
LOC_Os06g34460OsAffx.15735.1.S1_at10/116+20054856..20056256hypothetical protein
LOC_Os06g34470OsAffx.27933.1.S1_at11/116+20063669..20064172Zinc finger, C3HC4 type family protein

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Gene Ontology Classification
GO idTypeName
GO:0006457biological_processprotein folding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14566.1.S1_at--396--3151Chr06:20034160..20034184 (25 bp)
AATTCGGAAATCTCTGTTGGCCTCC
LOC_Os06g34440
Os.14566.1.S1_at--211--5211Chr06:20034118..20034142 (25 bp)
GAATTGAGTCCAACTTCTGTTTAGG
LOC_Os06g34440
Os.14566.1.S1_at--436--9471Chr06:20034054..20034078 (25 bp)
TCTGTGCAATGCTTCTGTGATGGGA
LOC_Os06g34440
Os.14566.1.S1_at--392--8211Chr06:20034032..20034056 (25 bp)
GGAATGGACAGACACCCTGCTGCAG
LOC_Os06g34440
Os.14566.1.S1_at--617--4171Chr06:20034003..20034027 (25 bp)
CCCAAGGTATCATTCGTCCATTTAT
LOC_Os06g34440
Os.14566.1.S1_at--646--10231Chr06:20033981..20034005 (25 bp)
TATTGATTTGTTTCTCTGCTGTTTT
LOC_Os06g34440
Os.14566.1.S1_at--553--7831Chr06:20033945..20034096 (25 bp)
GGTAAAGGTTTGTTGGCATCCATTT
LOC_Os06g34440
Os.14566.1.S1_at--412--4731Chr06:20033889..20033913 (25 bp)
GCTGTGTAGCTGTTGCTCTATGAAC
LOC_Os06g34440
Os.14566.1.S1_at--1045--3151Chr06:20033848..20033872 (25 bp)
AATTGGGATTTGGACCTCGAGCCTG
LOC_Os06g34440
Os.14566.1.S1_at--94--471Chr06:20033735..20033759 (25 bp)
ATCTCTGCTTATCCGAAGTCTTTGA
LOC_Os06g34440
Os.14566.1.S1_at--972--7771Chr06:20033703..20033728 (25 bp)
GGTGCATCTCTGAACACATGGTCTC
LOC_Os06g34440
Target Sequence 
AATTCGGAAATCTCTGTTGGCCTCCCTTTCCTGGAACTTAATGAATTGAGTCCAACTTCTGTTTAGGTTGCCAATTGANC
ATCATAGGGGTAACGATGAACTAGATTCTGTGCAATGCTTCTGTGATGGGAATGGACAGACACCCTGCTGCAGCTCTCCC
AAGGTATCATTCGTCCATTTATTGATTTGTTTCTCTGCTGTTTTCTTTCCAGCAAGGTAAAGGTTTGTTGGCATCCATTT
GATTTGATCTTTTAGTTTTGGATGTTGGTANGCTGTGTAGCTGTTGCTCTATGAACAGTTTCAAATCTTTAGAATTGGGA
TTTGGACCTCGAGCCTGTGATTTAGGTCTTGTTTAGAACAGGTAGGAATTTGTGGGAAATTTAGTTCAGTTTTAGTTGTA
TGAACCATACAAAGGTTAGACTTCATCTCTGCTTATCCGAAGTCTTTGATGTAATGGTGCATCTCTGAACACATGGTCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14566.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis