Browse Element(s) Details


OsAffx.15735.1.S1_at

Description tigr:9634.m03251
TID=OsAffx.15735.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3446010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g34420OsAffx.15736.1.S1_at11/116+20024975..20030158DEAD/DEAH box helicase family protein
LOC_Os06g34430Os.56371.1.S1_at10/116+20032289..20033346Zinc finger, C3HC4 type family protein, expressed
LOC_Os06g34440Os.14566.1.S1_at11/116+20033669..20041687DnaJ domain containing protein, expressed
LOC_Os06g34450Os.5874.1.S1_at11/116+20050306..20051375Zinc finger, C3HC4 type family protein, expressed
LOC_Os06g34460OsAffx.15735.1.S1_at10/116+20054856..20056256hypothetical protein
LOC_Os06g34470OsAffx.27933.1.S1_at11/116+20063669..20064172Zinc finger, C3HC4 type family protein
LOC_Os06g34480NANA6+20068816..20072120transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g34490NANA6+20074934..20075926transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g34500NANA6+20076971..20079548transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g34510NANA6+20080452..20083772transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15735.1.S1_at--614--10711Chr06:20056265..20056289 (25 bp)
TTGCTCCTCTTCTCAGTGGTCGCGA
NONE
OsAffx.15735.1.S1_at--922--4911Chr06:20056209..20056233 (25 bp)
GCTTGAAGAAGTGGCCCCTAGGTGC
LOC_Os06g34460
OsAffx.15735.1.S1_at--418--2871Chr06:20056201..20056225 (25 bp)
AAGTGGCCCCTAGGTGCAAGCGAGC
LOC_Os06g34460
OsAffx.15735.1.S1_at--166--3251Chr06:20056185..20056209 (25 bp)
CAAGCGAGCGGTGGCCCAAAGAGCA
LOC_Os06g34460
OsAffx.15735.1.S1_at--1155--2331Chr06:20056168..20056192 (25 bp)
AAAGAGCAGCTTGGGCGCTCAGCGT
LOC_Os06g34460
OsAffx.15735.1.S1_at--780--7511Chr06:20056145..20056169 (25 bp)
GTGGAGGCGATGAGACTCCAGATTT
LOC_Os06g34460
OsAffx.15735.1.S1_at--6--5811Chr06:20055388..20055412 (25 bp)
GACGCCTTGGTGCACAGCCAAGCCG
LOC_Os06g34460
OsAffx.15735.1.S1_at--480--5091Chr06:20055360..20055384 (25 bp)
GCACCGGCCTCACAGATAAAGCCAT
LOC_Os06g34460
OsAffx.15735.1.S1_at--315--1331Chr06:20055218..20055242 (25 bp)
AGAGGATGAGGGTTCACCGACATGT
LOC_Os06g34460
OsAffx.15735.1.S1_at--1006--4171Chr06:20054905..20055203 (25 bp)
CCCACGCTCGGGAAATGACTTTACA
LOC_Os06g34460
OsAffx.15735.1.S1_at--793--10331Chr06:20054886..20054910 (25 bp)
TTTACAAGATTTCACCGACCACGCG
LOC_Os06g34460
Target Sequence 
TTGCTCCTCTTCTCAGTGGTCGCGACTCCGGCGATGAAGGGTAGTGGCTGGGTAGGGCTTGAAGAAGTGGCCCCTAGGTG
CAAGCGAGCGGTGGCCCAAAGAGCAGCTTGGGCGCTCAGCGTGGAGGCGATGAGACTCCAGATTTGGGGATTTGGAGTGG
CGGTGGTGGCCGGATTTAGAGAAAATGGCGGCGGTGGTCGTTGGGCACTGGTGAGGAGTGAAATAGGGTCACAGAGGGAC
AAGGAGCTTGGGGCAGCCAACACGGACGCCTTGGTGCACAGCCAAGCCGTCGGCACCGGCCTCACAGATAAAGCCATCCC
CGATGCTGGAGGAGGTGGGATTGGTGGGGGCGCTCTGCCGGCCTACTCCGGGCGCCGCCGCTCCGTCCTATCGCCTGTTG
CAGGGAGAGAGAGGATAGAGAGAGGAGAGGAAGAAGAGGATGAGGGTTCACCGACATGTGGGGCCCACGCTCGGGAAATG
ACTTTACAAGATTTCACCGACCACGCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15735.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis