Browse Element(s) Details


OsAffx.30505.1.S1_at

Description gb:NM_196137.1
DB_XREF= gi:37533633
TID=OsAffx.30505.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0091J06.6), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g227807/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g22740OsAffx.8205.1.S1_at11/1110+11491121..11492666hypothetical protein
LOC_Os10g22750Os.46834.1.S1_at11/1110+11494547..11495515expressed protein
LOC_Os10g22760OsAffx.222.1.S1_at11/1110+11498343..11499747transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g22770OsAffx.31801.1.S1_at9/1110+11504486..11506836hypothetical protein
LOC_Os10g22770OsAffx.28844.1.S1_at5/1110+11504486..11506836hypothetical protein
LOC_Os10g22770OsAffx.31801.4.S1_at1/1110+11504486..11506836hypothetical protein
LOC_Os10g22780OsAffx.30505.1.S1_at7/1110+11509753..11511602hypothetical protein
LOC_Os10g22780OsAffx.8626.1.S1_at2/1110+11509753..11511602hypothetical protein
LOC_Os10g22790NANA10+11514015..11514408hypothetical protein
LOC_Os10g22800NANA10+11516058..11518527retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g22810NANA10+11522432..11524070hypothetical protein
LOC_Os10g22820OsAffx.30507.1.S1_at11/1110+11529025..11530397hypothetical protein
LOC_Os10g22820OsAffx.3274.1.S1_at2/1110+11529025..11530397hypothetical protein
LOC_Os10g22830OsAffx.30508.1.S1_at11/1110+11532563..11533984hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30505.1.S1_at--1108--3011Chr10:11510410..11510434 (25 bp)
AATGCTGCTCTACTCTTGTTAGATG
LOC_Os10g22780
OsAffx.30505.1.S1_at--345--10631Chr10:11510443..11510467 (25 bp)
TTCGATCAAGTTCATGTCTTCTGTA
LOC_Os10g22780
OsAffx.30505.1.S1_at--1154--7131Chr10:11510458..11510482 (25 bp)
GTCTTCTGTAAACATTCTTGCATCC
LOC_Os10g22780
OsAffx.30505.1.S1_at--586--4971NONE
GCATCCTTTGCTACTGTTTACATCA
NONE
OsAffx.30505.1.S1_at--855--2891Chr10:11511324..11511348 (25 bp)
AAGGTAGTCATTGTCGAGCACGTTC
LOC_Os10g22780
OsAffx.30505.1.S1_at--897--5091Chr10:11511341..11511365 (25 bp)
GCACGTTCTGGCTACTCTAGGGATA
LOC_Os10g22780
OsAffx.30505.1.S1_at--136--4171Chr10:11511410..11511434 (25 bp)
CGCCGTTCTGGCTGACAATGAGTTC
LOC_Os10g22780
OsAffx.30505.1.S1_at--99--9971Chr10:11511538..11511562 (25 bp)
TACCTGCTTGGCTTGATGGCATCAT
LOC_Os10g22780
OsAffx.30505.1.S1_at--192--8331Chr10:11512247..11512271 (25 bp)
GGCTGCCGGCAGCAAGGTTAATTTT
NONE
OsAffx.30505.1.S1_at--118--3131Chr10:11512266..11512290 (25 bp)
AATTTTGACCGCCTTGGTAGCGAGA
NONE
OsAffx.30505.1.S1_at--1062--5051Chr10:11512298..11512322 (25 bp)
GCAGCTGCCGACAAGGATTTGATAG
NONE
Target Sequence 
AATGCTGCTCTACTCTTGTTAGATGTTTTTGTTTTCGATCAAGTTCATGTCTTCTGTAAACATTCTTGCATCCTTTGCTA
CTGTTTACATCATGGAAAGGTAGTCATTGTCGAGCACGTTCTGGCTACTCTAGGGATAGGCGGCATGGGGCTTCTGCTTG
TCCTTGTTGGGCCTGATAGTGTCGCCGTTCTGGCTGACAATGAGTTCAGTGCGATTAACATGGGCGTCGATGACAGCGAA
CCAGACAATGAGTTCAGTGCGATTAACATGGGCGTCGATGACAGCGGTGGTTCGGACATCTTCGGCTTTGTACCTGCTTG
GCTTGATGGCATCATCGTTCTTATCGATGAGATAGCGTCGGCAGCGGCCGCNNNNGGGTTGTGGGAGAGGCTGCCGGCAG
CAAGGTTAATTTTGACCGCCTTGGTAGCGAGAGAGGGTTGCAGCTGCCGACAAGGATTTGATAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30505.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis