Browse Element(s) Details


OsAffx.8205.1.S1_at

Description tigr:9638.m01925
TID=OsAffx.8205.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2274011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g22710OsAffx.6736.1.S1_x_at11/1110+11464845..11466882expressed protein
LOC_Os10g22710OsAffx.6736.1.S1_at11/1110+11464845..11466882expressed protein
LOC_Os10g22710OsAffx.28845.1.S1_x_at1/1110+11464845..11466882expressed protein
LOC_Os10g22720OsAffx.30503.1.S1_at11/1110+11469998..11473960hypothetical protein
LOC_Os10g22730Os.7322.1.S1_at11/1110+11475856..11481847expressed protein
LOC_Os10g22730Os.52023.1.S1_at10/1110+11475856..11481847expressed protein
LOC_Os10g22740OsAffx.8205.1.S1_at11/1110+11491121..11492666hypothetical protein
LOC_Os10g22750Os.46834.1.S1_at11/1110+11494547..11495515expressed protein
LOC_Os10g22760OsAffx.222.1.S1_at11/1110+11498343..11499747transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g22770OsAffx.31801.1.S1_at9/1110+11504486..11506836hypothetical protein
LOC_Os10g22770OsAffx.28844.1.S1_at5/1110+11504486..11506836hypothetical protein
LOC_Os10g22770OsAffx.31801.4.S1_at1/1110+11504486..11506836hypothetical protein
LOC_Os10g22780OsAffx.30505.1.S1_at7/1110+11509753..11511602hypothetical protein
LOC_Os10g22780OsAffx.8626.1.S1_at2/1110+11509753..11511602hypothetical protein
LOC_Os10g22790NANA10+11514015..11514408hypothetical protein
LOC_Os10g22800NANA10+11516058..11518527retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.8205.1.S1_at--1--10371Chr10:11491586..11491610 (25 bp)
TTTTTGCTGCTAACCTTGATTGCCA
LOC_Os10g22740
OsAffx.8205.1.S1_at--281--6771Chr10:11491615..11491639 (25 bp)
GTTAAATCCCGGTCTAGAGTGCCTC
LOC_Os10g22740
OsAffx.8205.1.S1_at--140--10031Chr10:11491629..11491653 (25 bp)
TAGAGTGCCTCCTCGTGAAGAGCTT
LOC_Os10g22740
OsAffx.8205.1.S1_at--187--8911Chr10:11491838..11491862 (25 bp)
TGAGCGGAACCTTATCGTGGAGCAT
LOC_Os10g22740
OsAffx.8205.1.S1_at--80--7951Chr10:11491869..11491893 (25 bp)
GGATTTCTGCACTTCAATTTCTTGG
LOC_Os10g22740
OsAffx.8205.1.S1_at--1094--2791Chr10:11491969..11491993 (25 bp)
AAGATGTGTATGTTTGCTGCCCTTT
LOC_Os10g22740
OsAffx.8205.1.S1_at--531--5611Chr10:11492004..11492448 (25 bp)
GACAATGGCCACTGTTTCGGATGCA
LOC_Os10g22740
OsAffx.8205.1.S1_at--689--6331Chr10:11492443..11492467 (25 bp)
GATGCAGTGTTCGAGCTAAGTTTCT
LOC_Os10g22740
OsAffx.8205.1.S1_at--268--10411Chr10:11492467..11492491 (25 bp)
TTAGGCACCCCAGTAGTCATGTTTT
LOC_Os10g22740
OsAffx.8205.1.S1_at--822--1131Chr10:11492481..11492505 (25 bp)
AGTCATGTTTTTCTTGGTGGCCACA
LOC_Os10g22740
OsAffx.8205.1.S1_at--900--8711Chr10:11492510..11492534 (25 bp)
TGTAGATTTCCCATTTACCGACTCA
LOC_Os10g22740
Target Sequence 
TTTTTGCTGCTAACCTTGATTGCCAGATGGTTAAATCCCGGTCTAGAGTGCCTCCTCGTGAAGAGCTTCGTAGAATCAGT
GATGAGCGGGACTACAATAGTCTTCGTATTGCATTGAAGGCATACATCAGTCGAAGCAGTGAAAAGACTCCAGAACTACG
GGTTGTTAGTGTACTTGAGCGGAACCTTATCGTGGAGCATGGTCAAGGATTTCTGCACTTCAATTTCTTGGTGCAACCGG
TTGATTTAGAATCTTCAACACTCAAGATGTTCTTTGCAGAAGTTCACCTGGACTGCAAAGGAGACGAAGATGTGTATGTT
TGCTGCCCTTTGCATGTCCACGACAATGGCCACTGTTTCGGATGCAGTGTTCGAGCTAAGTTTCTTAGGCACCCCAGTAG
TCATGTTTTTCTTGGTGGCCACAAAGATGTAGATTTCCCATTTACCGACTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.8205.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis