Browse Element(s) Details


Os.46834.1.S1_at

Description gb:AK108902.1
DB_XREF= gi:32994111
TID=Os.46834.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.46834 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OJ1341F06.13), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-152-F07, full insert sequence.
FL= gb:AK108902.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2275011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g22720OsAffx.30503.1.S1_at11/1110+11469998..11473960hypothetical protein
LOC_Os10g22730Os.7322.1.S1_at11/1110+11475856..11481847expressed protein
LOC_Os10g22730Os.52023.1.S1_at10/1110+11475856..11481847expressed protein
LOC_Os10g22740OsAffx.8205.1.S1_at11/1110+11491121..11492666hypothetical protein
LOC_Os10g22750Os.46834.1.S1_at11/1110+11494547..11495515expressed protein
LOC_Os10g22760OsAffx.222.1.S1_at11/1110+11498343..11499747transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g22770OsAffx.31801.1.S1_at9/1110+11504486..11506836hypothetical protein
LOC_Os10g22770OsAffx.28844.1.S1_at5/1110+11504486..11506836hypothetical protein
LOC_Os10g22770OsAffx.31801.4.S1_at1/1110+11504486..11506836hypothetical protein
LOC_Os10g22780OsAffx.30505.1.S1_at7/1110+11509753..11511602hypothetical protein
LOC_Os10g22780OsAffx.8626.1.S1_at2/1110+11509753..11511602hypothetical protein
LOC_Os10g22790NANA10+11514015..11514408hypothetical protein
LOC_Os10g22800NANA10+11516058..11518527retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46834.1.S1_at--1049--3011Chr10:11495121..11495145 (25 bp)
AATCGGAAGGGTTCGGAGCCAGCTT
LOC_Os10g22750
Os.46834.1.S1_at--296--1791Chr10:11495147..11495171 (25 bp)
ACCGTTCTTGTGCTCCGTGAGTTTC
LOC_Os10g22750
Os.46834.1.S1_at--922--3991Chr10:11495162..11495186 (25 bp)
CGTGAGTTTCTTCCTCTGTTGCGGG
LOC_Os10g22750
Os.46834.1.S1_at--670--1031Chr10:11495212..11495236 (25 bp)
AGGTCTAGCTCACGGCACGATTGTG
LOC_Os10g22750
Os.46834.1.S1_at--350--10111Chr10:11495252..11495276 (25 bp)
TATGGCATCGGATTTTGGTCGTCCC
LOC_Os10g22750
Os.46834.1.S1_at--471--8551Chr10:11495267..11495291 (25 bp)
TGGTCGTCCCGTTTTAGCGTTTGCT
LOC_Os10g22750
Os.46834.1.S1_at--73--1651Chr10:11495282..11495306 (25 bp)
AGCGTTTGCTAGGTGTTCGATGGAA
LOC_Os10g22750
Os.46834.1.S1_at--831--6532Chr10:11495329..11495353 (25 bp)
GATTTCATTGCTTCTCGTTGACAGA
LOC_Os10g22750
Os.46834.1.S1_at--1067--6331Chr10:11495380..11495404 (25 bp)
GATGCTTTCATTTGTCTGACCTTTG
LOC_Os10g22750
Os.46834.1.S1_at--269--4891Chr10:11495446..11495470 (25 bp)
GCTTTACTTATTGCTCTCGATTAGA
LOC_Os10g22750
Os.46834.1.S1_at--463--3971Chr10:11495485..11495509 (25 bp)
CGGGAACCAATACCAATCATAGCTT
LOC_Os10g22750
Target Sequence 
AATCGGAAGGGTTCGGAGCCAGCTTCACCGTTCTTGTGCTCCGTGAGTTTCTTCCTCTGTTGCGGGGCGACGCGTTGTTG
TGCGGATGAGCAGGTCTAGCTCACGGCACGATTGTGTAGTGATATCGTACATATGGCATCGGATTTTGGTCGTCCCGTTT
TAGCGTTTGCTAGGTGTTCGATGGAATGCCCATAGAAAGTGTAGCTTCGATTTCATTGCTTCTCGTTGACAGAGTAAAAT
AATGCAGAACCGAGAAGATGATGCTTTCATTTGTCTGACCTTTGATTTTTGTGAATTTCTCTAGAACATATTCTAAACTG
TGAAAGCTTTACTTATTGCTCTCGATTAGACATGGATATTGCAACGGGAACCAATACCAATCATAGCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46834.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis