Browse Element(s) Details


Os.52023.1.S1_at

Description gb:AK064552.1
DB_XREF= gi:32974570
TID=Os.52023.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52023 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-112-C01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-112-C01, full insert sequence.
FL= gb:AK064552.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2273010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g22680OsAffx.30502.1.S1_x_at11/1110+11451129..11451915hypothetical protein
LOC_Os10g22680OsAffx.30502.1.S1_at11/1110+11451129..11451915hypothetical protein
LOC_Os10g22680OsAffx.22642.1.S1_x_at1/1110+11451129..11451915hypothetical protein
LOC_Os10g22690Os.52765.1.S1_at4/1110+11453165..11455525hypothetical protein
LOC_Os10g22700OsAffx.20433.1.S1_x_at11/1110+11460867..11461716expressed protein
LOC_Os10g22710OsAffx.6736.1.S1_x_at11/1110+11464845..11466882expressed protein
LOC_Os10g22710OsAffx.6736.1.S1_at11/1110+11464845..11466882expressed protein
LOC_Os10g22710OsAffx.28845.1.S1_x_at1/1110+11464845..11466882expressed protein
LOC_Os10g22720OsAffx.30503.1.S1_at11/1110+11469998..11473960hypothetical protein
LOC_Os10g22730Os.7322.1.S1_at11/1110+11475856..11481847expressed protein
LOC_Os10g22730Os.52023.1.S1_at10/1110+11475856..11481847expressed protein
LOC_Os10g22740OsAffx.8205.1.S1_at11/1110+11491121..11492666hypothetical protein
LOC_Os10g22750Os.46834.1.S1_at11/1110+11494547..11495515expressed protein
LOC_Os10g22760OsAffx.222.1.S1_at11/1110+11498343..11499747transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g22770OsAffx.31801.1.S1_at9/1110+11504486..11506836hypothetical protein
LOC_Os10g22770OsAffx.28844.1.S1_at5/1110+11504486..11506836hypothetical protein
LOC_Os10g22770OsAffx.31801.4.S1_at1/1110+11504486..11506836hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52023.1.S1_at--791--1811Chr10:11477123..11477147 (25 bp)
ACCCTTTTTATGTCCTGCTTCTGAT
LOC_Os10g22730
Os.52023.1.S1_at--647--4911Chr10:11477107..11477131 (25 bp)
GCTTCTGATGGCCTCAAGTACTTCC
LOC_Os10g22730
Os.52023.1.S1_at--160--3751Chr10:11477081..11477105 (25 bp)
CTCACACCTCTTTCTAGTCATTTGA
LOC_Os10g22730
Os.52023.1.S1_at--627--7911Chr10:11477052..11477076 (25 bp)
GGTTGATTTGTCTACTAGGGCCCAC
LOC_Os10g22730
Os.52023.1.S1_at--567--10051Chr10:11477037..11477061 (25 bp)
TAGGGCCCACCTCGACACAGTTTAT
LOC_Os10g22730
Os.52023.1.S1_at--257--10211Chr10:11477015..11477039 (25 bp)
TATTTTTGTTCGGTTAGCGCCTTGT
LOC_Os10g22730
Os.52023.1.S1_at--1023--4271Chr10:11476999..11477023 (25 bp)
GCGCCTTGTTCGAGTTACTGGTATT
LOC_Os10g22730
Os.52023.1.S1_at--252--9931Chr10:11476984..11477008 (25 bp)
TACTGGTATTCTTGGTCTTTCTTCT
LOC_Os10g22730
Os.52023.1.S1_at--343--7811Chr10:11476971..11476995 (25 bp)
GGTCTTTCTTCTTGATTGGAACTTA
LOC_Os10g22730
Os.52023.1.S1_at--575--4951NONE
GCATAGTAATTCTTGTCAGGGACGT
NONE
Os.52023.1.S1_at--770--9631Chr10:11476414..11476514 (25 bp)
TCAGGCTCAGTTTGTGCAGTCCACA
LOC_Os10g22730
Target Sequence 
ACCCTTTTTATGTCCTGCTTCTGATGGCCTCAAGTACTTCCCCTCACACCTCTTTCTAGTCATTTGATCATGGTTGATTT
GTCTACTAGGGCCCACCTCGACACAGTTTATTTTTGTTCGGTTAGCGCCTTGTTCGAGTTACTGGTATTCTTGGTCTTTC
TTCTTGATTGGAACTTATATGCAAGCATAGTAATTCTTGTCAGGGACGTGTTCATATTACGCGACACTATCATCAGTTGA
GTCCTTGTATAAAAGAGAATATGCATCATACCCTACTATCTTAAAAGATAAGATTGGACAGCCTGATGAATTTCTGGTTA
ATCTGTCAAGAGCTCAGTTGGAAGATATAGTAGAAGATTTTTATACCAGGCATAAAGTCAAGGGTTCGAAAAGGTTGAAT
GTTTGTTTAGATAAGATGAAAAATGAAGGCGTTATTTCGGAAGAATCATATATGAACCCTCAGGCTCAGTTTGTGCAGTC
CACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52023.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis