Browse Element(s) Details


OsAffx.25839.1.S1_at

Description tigr:9632.m00150
TID=OsAffx.25839.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Leucine Rich Repeat, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0245011/11Leucine Rich Repeat family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g02410NANA4+858723..859319hypothetical protein
LOC_Os04g02420Os.38395.3.S1_x_at10/114+862602..867560transposon protein, putative, Mutator sub-class
LOC_Os04g02420Os.38395.2.S1_x_at8/114+862602..867560transposon protein, putative, Mutator sub-class
LOC_Os04g02420Os.38395.4.S1_x_at5/114+862602..867560transposon protein, putative, Mutator sub-class
LOC_Os04g02420Os.38395.1.S1_at1/114+862602..867560transposon protein, putative, Mutator sub-class
LOC_Os04g02434OsAffx.3704.1.S1_at11/114+871459..874803Transposable element protein, putative, MuDR, expressed
LOC_Os04g02434Os.38395.5.S1_at2/114+871459..874803Transposable element protein, putative, MuDR, expressed
LOC_Os04g02450OsAffx.25839.1.S1_at11/114+879014..881296Leucine Rich Repeat family protein
LOC_Os04g02460Os.52238.1.S1_at2/114+884186..885139retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g02470NANA4+886002..886529expressed protein
LOC_Os04g02480OsAffx.13620.1.S1_at11/114+889546..889890hypothetical protein
LOC_Os04g02490Os.10659.1.S1_at5/114+890345..891202hypothetical protein
LOC_Os04g02490Os.14980.1.A1_at3/114+890345..891202hypothetical protein
LOC_Os04g02490Os.10659.1.S1_s_at3/114+890345..891202hypothetical protein
LOC_Os04g02500Os.17572.1.S1_at11/114+895931..900505G-patch domain containing protein, expressed
LOC_Os04g02500OsAffx.26875.1.S1_at2/114+895931..900505G-patch domain containing protein, expressed
LOC_Os04g02500OsAffx.32255.1.A1_at1/114+895931..900505G-patch domain containing protein, expressed
LOC_Os04g02500OsAffx.8626.1.S1_at1/114+895931..900505G-patch domain containing protein, expressed
LOC_Os04g02510Os.27727.1.S1_s_at11/114+904471..908190Zinc finger, C2H2 type family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25839.1.S1_at--430--651Chr04:879575..879599 (25 bp)
ATGCACTGTCCTGGGTAGCCTGAAA
LOC_Os04g02450
OsAffx.25839.1.S1_at--899--6191Chr04:879494..879518 (25 bp)
GAGGCTTAGGGATCTCTACATCGGT
LOC_Os04g02450
OsAffx.25839.1.S1_at--1001--8194Chr11:12605589..12605651 (24 bp)
GGAAGGCCTGAACCATCTTGATAGC
NONE
OsAffx.25839.1.S1_at--477--8071Chr04:879419..879443 (25 bp)
GGAGCACCTTACCATCATCAAGTGT
LOC_Os04g02450
OsAffx.25839.1.S1_at--149--2631Chr04:879341..879365 (25 bp)
AACCGTCGATGACATGTCCCTTGTA
LOC_Os04g02450
OsAffx.25839.1.S1_at--211--1971Chr04:879284..879308 (25 bp)
ACTGAAATGGCTTGCGCTCGAACAC
LOC_Os04g02450
OsAffx.25839.1.S1_at--267--8551Chr04:879238..879262 (25 bp)
TGGATCCTAGAGCACTTGACTTCAC
LOC_Os04g02450
OsAffx.25839.1.S1_at--691--10751Chr04:879223..879247 (25 bp)
TTGACTTCACTAGCTTACCTTGGGT
LOC_Os04g02450
OsAffx.25839.1.S1_at--373--7871Chr04:879201..879225 (25 bp)
GGTTTACTTCCTGCCATTGGAACAG
LOC_Os04g02450
OsAffx.25839.1.S1_at--1096--5411Chr04:879158..879182 (25 bp)
GAACCTCACCGCACTTAAGGAGTTA
LOC_Os04g02450
OsAffx.25839.1.S1_at--883--191Chr04:879126..879150 (25 bp)
ATTTCTGTGGAAGTATCCGGTCCCT
LOC_Os04g02450
Target Sequence 
ATGCACTGTCCTGGGTAGCCTGAAACTAAGTCAAATTGACTCTTTCACAGAGATACCTTCTGAGACAATGAGGTCTCTAG
TGAGGCTTAGGGATCTCTACATCGGTGGCTGTAAGCAATTAGTTCGCTTGGAAGGCCTGAACCATCTTGATAGCCTGGAG
CACCTTACCATCATCAAGTGTCCCAGCCTTATGGACTTGAAAGTAGCCGGCAAAGCACACGCAGTTCCTCGGCTAACCGT
CGATGACATGTCCCTTGTACCCAAGCTTTTGTCAAGAGGGGCATATCCATCACTGAAATGGCTTGCGCTCGAACACTCGG
TGGAACTGAGGGGAGAGTGGATCCTAGAGCACTTGACTTCACTAGCTTACCTTGGGTTTACTTCCTGCCATTGGAACAGC
TTACCCAACAACTTGGAGAACCTCACCGCACTTAAGGAGTTATATTTTGATTTCTGTGGAAGTATCCGGTCCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25839.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis