Browse Element(s) Details


OsAffx.3704.1.S1_at

Description tigr:9632.m00149
TID=OsAffx.3704.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0243411/11Transposable element protein, putative, MuDR, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g02380OsAffx.3702.1.S1_at7/114+846466..847685hypothetical protein
LOC_Os04g02380Os.20069.2.S1_at1/114+846466..847685hypothetical protein
LOC_Os04g02390NANA4+849495..850961transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g02400NANA4+852130..852510hypothetical protein
LOC_Os04g02410NANA4+858723..859319hypothetical protein
LOC_Os04g02420Os.38395.3.S1_x_at10/114+862602..867560transposon protein, putative, Mutator sub-class
LOC_Os04g02420Os.38395.2.S1_x_at8/114+862602..867560transposon protein, putative, Mutator sub-class
LOC_Os04g02420Os.38395.4.S1_x_at5/114+862602..867560transposon protein, putative, Mutator sub-class
LOC_Os04g02420Os.38395.1.S1_at1/114+862602..867560transposon protein, putative, Mutator sub-class
LOC_Os04g02434OsAffx.3704.1.S1_at11/114+871459..874803Transposable element protein, putative, MuDR, expressed
LOC_Os04g02434Os.38395.5.S1_at2/114+871459..874803Transposable element protein, putative, MuDR, expressed
LOC_Os04g02450OsAffx.25839.1.S1_at11/114+879014..881296Leucine Rich Repeat family protein
LOC_Os04g02460Os.52238.1.S1_at2/114+884186..885139retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g02470NANA4+886002..886529expressed protein
LOC_Os04g02480OsAffx.13620.1.S1_at11/114+889546..889890hypothetical protein
LOC_Os04g02490Os.10659.1.S1_at5/114+890345..891202hypothetical protein
LOC_Os04g02490Os.14980.1.A1_at3/114+890345..891202hypothetical protein
LOC_Os04g02490Os.10659.1.S1_s_at3/114+890345..891202hypothetical protein
LOC_Os04g02500Os.17572.1.S1_at11/114+895931..900505G-patch domain containing protein, expressed
LOC_Os04g02500OsAffx.26875.1.S1_at2/114+895931..900505G-patch domain containing protein, expressed
LOC_Os04g02500OsAffx.32255.1.A1_at1/114+895931..900505G-patch domain containing protein, expressed
LOC_Os04g02500OsAffx.8626.1.S1_at1/114+895931..900505G-patch domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3704.1.S1_at--443--5591Chr04:874722..874746 (25 bp)
GACAATTTGAAGCTTAACTCCCAGT
LOC_Os04g02434
OsAffx.3704.1.S1_at--45--6551Chr04:874675..874699 (25 bp)
GATTTTGCAGATCCCCTTGATGCAG
LOC_Os04g02434
OsAffx.3704.1.S1_at--969--4311Chr04:874661..874685 (25 bp)
CCTTGATGCAGGACACTTCGAGTGA
LOC_Os04g02434
OsAffx.3704.1.S1_at--145--411Chr04:874011..874035 (25 bp)
ATCAGATGCTACCTGGATGCAGCCT
LOC_Os04g02434
OsAffx.3704.1.S1_at--1090--9011Chr04:873994..874018 (25 bp)
TGCAGCCTGGGACAATGGACAAACT
LOC_Os04g02434
OsAffx.3704.1.S1_at--35--591Chr04:873929..873953 (25 bp)
ATGCCATGTTTATTCAAGCCTGTTC
LOC_Os04g02434
OsAffx.3704.1.S1_at--343--2411Chr04:873904..873928 (25 bp)
AAACAAAGCTCATTCTGCTCTGCAA
LOC_Os04g02434
OsAffx.3704.1.S1_at--7--4731Chr04:873879..873903 (25 bp)
GCTGAACTTCTTGCTTTACAACTTT
LOC_Os04g02434
OsAffx.3704.1.S1_at--924--10531Chr04:873826..873850 (25 bp)
TTCAGGTGTCACTTACCTATCTGAC
LOC_Os04g02434
OsAffx.3704.1.S1_at--801--711Chr04:873758..873782 (25 bp)
ATGATCCAGGCCACTGGAGTCTTAG
LOC_Os04g02434
OsAffx.3704.1.S1_at--400--6071Chr04:873742..873766 (25 bp)
GAGTCTTAGACCTTTTTGGACGCAA
LOC_Os04g02434
Target Sequence 
GACAATTTGAAGCTTAACTCCCAGTTTGAAGAGGAAGCTGTTCAAAAGATTTTGCAGATCCCCTTGATGCAGGACACTTC
GAGTGATAAACTATGTTGGAGATTCACAAAGAATGGAGAATGTAACTCAAAAAGTGCTTATAGGGAATTCTACAAAAGGG
ATAATCAAAATCTTCAACAGGATAATGAGCAATCAGAGGCAGGCACAAGGAGGATGGACACAATTCCGAATGGAATCAGA
TGCTACCTGGATGCAGCCTGGGACAATGGACAAACTGGCATAGGAATTTTTTTTTTTCATAATCCTCAAAATCATAATGC
CATGTTTATTCAAGCCTGTTCAAACAAAGCTCATTCTGCTCTGCAAGCTGAACTTCTTGCTTTACAACTTTCTTTGGAAA
CTGACATGTGTTTGAATTTTTCAGGTGTCACTTACCTATCTGACAATACTACTATTGCGGACACAGCAAAGAAGAAGAAT
TTCATGGATGATCCAGGCCACTGGAGTCTTAGACCTTTTTGGACGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3704.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis