Browse Element(s) Details


OsAffx.3702.1.S1_at

Description tigr:9632.m00143
TID=OsAffx.3702.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g023807/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g02350Os.35344.3.S1_x_at10/114+818752..824644transposon protein, putative, Mutator sub-class
LOC_Os04g02350Os.35344.18.S1_x_at9/114+818752..824644transposon protein, putative, Mutator sub-class
LOC_Os04g02350OsAffx.22940.5.S1_x_at3/114+818752..824644transposon protein, putative, Mutator sub-class
LOC_Os04g02360NANA4+828591..832636transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g02370Os.38395.4.S1_x_at7/114+835263..845313transposon protein, putative, Mutator sub-class
LOC_Os04g02370Os.38395.5.S1_at2/114+835263..845313transposon protein, putative, Mutator sub-class
LOC_Os04g02380OsAffx.3702.1.S1_at7/114+846466..847685hypothetical protein
LOC_Os04g02380Os.20069.2.S1_at1/114+846466..847685hypothetical protein
LOC_Os04g02390NANA4+849495..850961transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g02400NANA4+852130..852510hypothetical protein
LOC_Os04g02410NANA4+858723..859319hypothetical protein
LOC_Os04g02420Os.38395.3.S1_x_at10/114+862602..867560transposon protein, putative, Mutator sub-class
LOC_Os04g02420Os.38395.2.S1_x_at8/114+862602..867560transposon protein, putative, Mutator sub-class
LOC_Os04g02420Os.38395.4.S1_x_at5/114+862602..867560transposon protein, putative, Mutator sub-class
LOC_Os04g02420Os.38395.1.S1_at1/114+862602..867560transposon protein, putative, Mutator sub-class
LOC_Os04g02434OsAffx.3704.1.S1_at11/114+871459..874803Transposable element protein, putative, MuDR, expressed
LOC_Os04g02434Os.38395.5.S1_at2/114+871459..874803Transposable element protein, putative, MuDR, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3702.1.S1_at--791--3931Chr04:847597..847621 (25 bp)
CGGCGATGGCCGACTACGCACACCC
LOC_Os04g02380
OsAffx.3702.1.S1_at--99--4211Chr04:847578..847597 (20 bp)
CCCCATTGGATCCTAACCAGATATC
LOC_Os04g02380
OsAffx.3702.1.S1_at--692--10851NONE
TTGGATCCTAACCAGATATCCGTCG
NONE
OsAffx.3702.1.S1_at--681--7891NONE
GGATCCTAACCAGATATCCGTCGAA
NONE
OsAffx.3702.1.S1_at--847--6351NONE
GATCCTAACCAGATATCCGTCGAAC
NONE
OsAffx.3702.1.S1_at--372--531NONE
ATCCTAACCAGATATCCGTCGAACT
NONE
OsAffx.3702.1.S1_at--206--1054Chr07:26828993..26829014 (22 bp)
AGGGTCGTGTTCTCCATTTATTACG
NONE
OsAffx.3702.1.S1_at--789--7694Chr07:26828994..26829014 (21 bp)
GGGTCGTGTTCTCCATTTATTACGA
NONE
OsAffx.3702.1.S1_at--964--7794Chr07:26828995..26829014 (20 bp)
GGTCGTGTTCTCCATTTATTACGAA
NONE
OsAffx.3702.1.S1_at--599--7191Chr04:846513..846537 (25 bp)
GTCGTGTTCTCCATTTATTACGAAC
LOC_Os04g02380
OsAffx.3702.1.S1_at--203--10431Chr04:846507..846531 (25 bp)
TTCTCCATTTATTACGAACAGCCCC
LOC_Os04g02380
Target Sequence 
CGGCGATGGCCGACTACGCACACCCCCCATTGGATCCTAACCAGATATCCGTCGAACTGGCGCAGTTCGACAGGGTCGTG
TTCTCCATTTATTACGAACAGCCCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3702.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis