Browse Element(s) Details


Os.14980.1.A1_at

Description gb:CR278604
DB_XREF= gi:44665170
DB_XREF=CR278604
CLONE=p755d10p3
TID=Os.14980.1
CNT=4
FEA=EST
TIER=ConsEnd
STK=4
UG=Os.14980 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g024903/11hypothetical protein
LOC_Os07g261003/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g02420Os.38395.3.S1_x_at10/114+862602..867560transposon protein, putative, Mutator sub-class
LOC_Os04g02420Os.38395.2.S1_x_at8/114+862602..867560transposon protein, putative, Mutator sub-class
LOC_Os04g02420Os.38395.4.S1_x_at5/114+862602..867560transposon protein, putative, Mutator sub-class
LOC_Os04g02420Os.38395.1.S1_at1/114+862602..867560transposon protein, putative, Mutator sub-class
LOC_Os04g02434OsAffx.3704.1.S1_at11/114+871459..874803Transposable element protein, putative, MuDR, expressed
LOC_Os04g02434Os.38395.5.S1_at2/114+871459..874803Transposable element protein, putative, MuDR, expressed
LOC_Os04g02450OsAffx.25839.1.S1_at11/114+879014..881296Leucine Rich Repeat family protein
LOC_Os04g02460Os.52238.1.S1_at2/114+884186..885139retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g02470NANA4+886002..886529expressed protein
LOC_Os04g02480OsAffx.13620.1.S1_at11/114+889546..889890hypothetical protein
LOC_Os04g02490Os.10659.1.S1_at5/114+890345..891202hypothetical protein
LOC_Os04g02490Os.14980.1.A1_at3/114+890345..891202hypothetical protein
LOC_Os04g02490Os.10659.1.S1_s_at3/114+890345..891202hypothetical protein
LOC_Os04g02500Os.17572.1.S1_at11/114+895931..900505G-patch domain containing protein, expressed
LOC_Os04g02500OsAffx.26875.1.S1_at2/114+895931..900505G-patch domain containing protein, expressed
LOC_Os04g02500OsAffx.32255.1.A1_at1/114+895931..900505G-patch domain containing protein, expressed
LOC_Os04g02500OsAffx.8626.1.S1_at1/114+895931..900505G-patch domain containing protein, expressed
LOC_Os04g02510Os.27727.1.S1_s_at11/114+904471..908190Zinc finger, C2H2 type family protein, expressed
LOC_Os04g02520OsAffx.13622.1.S1_at11/114+912253..920506Leucine Rich Repeat family protein
LOC_Os04g02520Os.54925.1.S1_at2/114+912253..920506Leucine Rich Repeat family protein
LOC_Os04g02520OsAffx.28137.1.S1_at1/114+912253..920506Leucine Rich Repeat family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14980.1.A1_at--171--7912Chr07:14972470..14972506 (25 bp)
GGTTGGCCGGAGTTTCTTGATGTTT
LOC_Os07g26100
Os.14980.1.A1_at--290--6612Chr07:14972469..14972505 (25 bp)
GTTGGCCGGAGTTTCTTGATGTTTC
LOC_Os07g26100
Os.14980.1.A1_at--403--10632Chr07:14972468..14972504 (25 bp)
TTGGCCGGAGTTTCTTGATGTTTCT
LOC_Os07g26100
Os.14980.1.A1_at--447--5591NONE
GAAATCAACTGTTAAGTCCAGTGAA
NONE
Os.14980.1.A1_at--639--9711NONE
TCAACTGTTAAGTCCAGTGAAGCTC
NONE
Os.14980.1.A1_at--183--2571NONE
AACTGTTAAGTCCAGTGAAGCTCAC
NONE
Os.14980.1.A1_at--600--3751NONE
CTGTTAAGTCCAGTGAAGCTCACAC
NONE
Os.14980.1.A1_at--1116--6751NONE
GTTAAGTCCAGTGAAGCTCACACTA
NONE
Os.14980.1.A1_at--66--10511NONE
TTAAGTCCAGTGAAGCTCACACTAA
NONE
Os.14980.1.A1_at--919--9771NONE
TAAGTCCAGTGAAGCTCACACTAAA
NONE
Os.14980.1.A1_at--1005--8211NONE
GGCAATGCCGCTACTCCCTGTCGAT
NONE
Target Sequence 
GGTTGGCCGGAGTTTCTTGATGTTTCTATNCAGTGGTACCCNCGCTNGGNTTCGTCGTTCNGGTTGAGGNCAGACCGTCC
GTGCAACCTTGTTTCACAGGATTGCAGTCAGTTCTCCTCAGATTCAATGATCAACTCCGTGGAAATCAACTGTTAAGTCC
AGTGAAGCTCACACTAAAATCTACGACTCAACNAACNAACCTTCAATTTGTGCCGTTCCCGTGGAAGCAACTAAAGGGGA
TTATCGGTTTATCAAGCGGTGTGCACGTCAATGAAGACCCATAGATGTAGTCGTCGCGGCAATGCCGCTACTCCCTGTCG
AT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14980.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis