Browse Element(s) Details


OsAffx.13620.1.S1_at

Description tigr:9632.m00153
TID=OsAffx.13620.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0248011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g02420Os.38395.3.S1_x_at10/114+862602..867560transposon protein, putative, Mutator sub-class
LOC_Os04g02420Os.38395.2.S1_x_at8/114+862602..867560transposon protein, putative, Mutator sub-class
LOC_Os04g02420Os.38395.4.S1_x_at5/114+862602..867560transposon protein, putative, Mutator sub-class
LOC_Os04g02420Os.38395.1.S1_at1/114+862602..867560transposon protein, putative, Mutator sub-class
LOC_Os04g02434OsAffx.3704.1.S1_at11/114+871459..874803Transposable element protein, putative, MuDR, expressed
LOC_Os04g02434Os.38395.5.S1_at2/114+871459..874803Transposable element protein, putative, MuDR, expressed
LOC_Os04g02450OsAffx.25839.1.S1_at11/114+879014..881296Leucine Rich Repeat family protein
LOC_Os04g02460Os.52238.1.S1_at2/114+884186..885139retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g02470NANA4+886002..886529expressed protein
LOC_Os04g02480OsAffx.13620.1.S1_at11/114+889546..889890hypothetical protein
LOC_Os04g02490Os.10659.1.S1_at5/114+890345..891202hypothetical protein
LOC_Os04g02490Os.14980.1.A1_at3/114+890345..891202hypothetical protein
LOC_Os04g02490Os.10659.1.S1_s_at3/114+890345..891202hypothetical protein
LOC_Os04g02500Os.17572.1.S1_at11/114+895931..900505G-patch domain containing protein, expressed
LOC_Os04g02500OsAffx.26875.1.S1_at2/114+895931..900505G-patch domain containing protein, expressed
LOC_Os04g02500OsAffx.32255.1.A1_at1/114+895931..900505G-patch domain containing protein, expressed
LOC_Os04g02500OsAffx.8626.1.S1_at1/114+895931..900505G-patch domain containing protein, expressed
LOC_Os04g02510Os.27727.1.S1_s_at11/114+904471..908190Zinc finger, C2H2 type family protein, expressed
LOC_Os04g02520OsAffx.13622.1.S1_at11/114+912253..920506Leucine Rich Repeat family protein
LOC_Os04g02520Os.54925.1.S1_at2/114+912253..920506Leucine Rich Repeat family protein
LOC_Os04g02520OsAffx.28137.1.S1_at1/114+912253..920506Leucine Rich Repeat family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13620.1.S1_at--817--491Chr04:889824..889848 (25 bp)
ATCGGATGGATCGTGTCGCCCATGA
LOC_Os04g02480
OsAffx.13620.1.S1_at--565--7771Chr04:889789..889813 (25 bp)
GGTGAACAAAGGCATCGACCTGCTC
LOC_Os04g02480
OsAffx.13620.1.S1_at--675--5831Chr04:889773..889797 (25 bp)
GACCTGCTCAACTGCGACCAAGAAG
LOC_Os04g02480
OsAffx.13620.1.S1_at--903--4571Chr04:889741..889765 (25 bp)
GCGCAACCTGGTGGCATGTCTTGAG
LOC_Os04g02480
OsAffx.13620.1.S1_at--666--3831Chr04:889710..889734 (25 bp)
CTGCGTAGGCAGATGGAACACATGA
LOC_Os04g02480
OsAffx.13620.1.S1_at--160--2111Chr04:889691..889715 (25 bp)
ACATGACATCCATGCCGTATCTGGA
LOC_Os04g02480
OsAffx.13620.1.S1_at--151--1111Chr04:889664..889688 (25 bp)
AGTGGGTGCAGAGCCTCAGATCTGC
LOC_Os04g02480
OsAffx.13620.1.S1_at--212--1291Chr04:889647..889671 (25 bp)
AGATCTGCCTTCTACGACGCAGAGG
LOC_Os04g02480
OsAffx.13620.1.S1_at--930--7511Chr04:889617..889641 (25 bp)
GTGGACATCCACGATTACCTTAACC
LOC_Os04g02480
OsAffx.13620.1.S1_at--471--9211Chr04:889586..889610 (25 bp)
TCCACATGCAGCTTTGTCGCTTTGG
LOC_Os04g02480
OsAffx.13620.1.S1_at--82--4891Chr04:889576..889600 (25 bp)
GCTTTGTCGCTTTGGCTGCAAACCA
LOC_Os04g02480
Target Sequence 
ATCGGATGGATCGTGTCGCCCATGACCACCAAGGCGGTGAACAAAGGCATCGACCTGCTCAACTGCGACCAAGAAGCCCA
GCTGCGCAACCTGGTGGCATGTCTTGAGCCGCAGCTGCGTAGGCAGATGGAACACATGACATCCATGCCGTATCTGGACA
AGTGGGTGCAGAGCCTCAGATCTGCCTTCTACGACGCAGAGGACATCGTGGACATCCACGATTACCTTAACCTCGCCCTC
CACATGCAGCTTTGTCGCTTTGGCTGCAAACCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13620.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis