Browse Element(s) Details


Os.10659.1.S1_s_at

Description gb:AK103470.1
DB_XREF= gi:32988679
TID=Os.10659.1
CNT=15
FEA=FLmRNA
TIER=FL+Stack
STK=9
UG=Os.10659 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033130A10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033130A10, full insert sequence.
FL= gb:AK103470.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2610011/11expressed protein
LOC_Os04g024903/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g26070Os.47463.1.S1_x_at4/117+14958505..14961706transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g26070Os.14491.2.S1_x_at3/117+14958505..14961706transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g26080Os.41248.4.S1_x_at1/117+14964274..14966590transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g26090NANA7+14969369..14970702transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g26100Os.10659.1.S1_s_at11/117+14972019..14973329expressed protein
LOC_Os07g26100Os.10659.1.S1_at11/117+14972019..14973329expressed protein
LOC_Os07g26100Os.14980.1.A1_at3/117+14972019..14973329expressed protein
LOC_Os07g26110Os.53561.1.S1_at11/117+14986869..14989129plant integral membrane protein TIGR01569 containing protein, expressed
LOC_Os07g26120Os.35344.18.S1_x_at11/117+14997725..15003772transposon protein, putative, Mutator sub-class
LOC_Os07g26120Os.35344.3.S1_x_at9/117+14997725..15003772transposon protein, putative, Mutator sub-class
LOC_Os07g26120OsAffx.22940.5.S1_x_at3/117+14997725..15003772transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10659.1.S1_s_at--296--6952Chr07:14972528..14972552 (25 bp)
GTAGAAAGACAGCAGATCAATCAAT
LOC_Os07g26100
Os.10659.1.S1_s_at--712--9572Chr07:14972492..14972516 (25 bp)
TCTTGACTAAGGTTGGCCGGAGTTT
LOC_Os07g26100
Os.10659.1.S1_s_at--811--3391Chr07:14972401..14972425 (25 bp)
CAGACCGTCCGTGCAACCTTGTTTC
LOC_Os07g26100
Os.10659.1.S1_s_at--862--9714Chr03:18580671..18580948 (25 bp)
TCAAGCGGTGTGCACGTCAATGAAG
NONE
Os.10659.1.S1_s_at--913--7212Chr07:14972156..14972180 (25 bp)
GTCGATCTCATCCATTATCACTGTA
LOC_Os07g26100
Os.10659.1.S1_s_at--5--5232Chr07:14972119..14972143 (25 bp)
GAATTTGTTTCCCTTAGTTCAGTCT
LOC_Os07g26100
Os.10659.1.S1_s_at--1127--192Chr07:14972117..14972141 (25 bp)
ATTTGTTTCCCTTAGTTCAGTCTGT
LOC_Os07g26100
Os.10659.1.S1_s_at--939--6832Chr07:14972113..14972137 (25 bp)
GTTTCCCTTAGTTCAGTCTGTCTCA
LOC_Os07g26100
Os.10659.1.S1_s_at--699--10052Chr07:14972105..14972129 (25 bp)
TAGTTCAGTCTGTCTCATCTTTAGA
LOC_Os07g26100
Os.10659.1.S1_s_at--791--3452Chr07:14972100..14972124 (25 bp)
CAGTCTGTCTCATCTTTAGAAAGGA
LOC_Os07g26100
Os.10659.1.S1_s_at--1089--1412Chr07:14972083..14972107 (25 bp)
AGAAAGGATGGTTTGGTGTATGATC
LOC_Os07g26100
Target Sequence 
GTAGAAAGACAGCAGATCAATCAATGCCATCCTNAGTTCTTGACTAAGGTTGGCCGGAGTTTGGGGACCTCTTTCTTGAT
GTTTCTATACAGTGGTACCCATGCTGGGTTCGTCGTTCGGGTTGAGGGCAGACCGTCCGTGCAACCTTGTTTCGCAGGAT
TGCAGTCAGTGCTCCTCAGATTCAATGATAAACTCCGTGGAAATCAACTGTTAAAGTCCGGTGAAGCTCACACCAAAATC
TACGACTCAACAACAAACCTTCAATTTGTGCCGTTCCCGTGGAGGCAACCAAAGGGGATTATCGGTTTGTCAAGCGGTGT
GCACGTCAATGAAGGCCCATGGATGTAGTCGTCGCGGCAACGCCGCTACTCCTGTCGATCTCATCCATTATCACTGTATG
GCTACATCAGGAATTTGTTTCCCTTAGTTCAGTCTGTCTCATCTTTAGAAAGGATGGTTTGGTGTATGATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10659.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis