Browse Element(s) Details


Os.53561.1.S1_at

Description gb:AK073296.1
DB_XREF= gi:32983319
TID=Os.53561.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53561 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033029H14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033029H14, full insert sequence.
FL= gb:AK073296.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2611011/11plant integral membrane protein TIGR01569 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g26080Os.41248.4.S1_x_at1/117+14964274..14966590transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g26090NANA7+14969369..14970702transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g26100Os.10659.1.S1_s_at11/117+14972019..14973329expressed protein
LOC_Os07g26100Os.10659.1.S1_at11/117+14972019..14973329expressed protein
LOC_Os07g26100Os.14980.1.A1_at3/117+14972019..14973329expressed protein
LOC_Os07g26110Os.53561.1.S1_at11/117+14986869..14989129plant integral membrane protein TIGR01569 containing protein, expressed
LOC_Os07g26120Os.35344.18.S1_x_at11/117+14997725..15003772transposon protein, putative, Mutator sub-class
LOC_Os07g26120Os.35344.3.S1_x_at9/117+14997725..15003772transposon protein, putative, Mutator sub-class
LOC_Os07g26120OsAffx.22940.5.S1_x_at3/117+14997725..15003772transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53561.1.S1_at--76--8851Chr07:14987695..14987719 (25 bp)
TGATCACGGCCATCAGCTCGGTGAG
LOC_Os07g26110
Os.53561.1.S1_at--342--8891Chr07:14987716..14987740 (25 bp)
TGAGGTTGCTCTCCAGCTCGGCTTG
LOC_Os07g26110
Os.53561.1.S1_at--707--2171Chr07:14988699..14988723 (25 bp)
ACACCCGGTGGAACAAGATATGCAA
LOC_Os07g26110
Os.53561.1.S1_at--1119--5411Chr07:14988834..14988858 (25 bp)
GAAGCCGTTGATTCATTCCCCATGA
LOC_Os07g26110
Os.53561.1.S1_at--782--91Chr07:14988848..14988872 (25 bp)
ATTCCCCATGAACTTGTTTGCTGCC
LOC_Os07g26110
Os.53561.1.S1_at--954--8091Chr07:14988882..14988906 (25 bp)
GGACCGTAGAGTTGCTTGCTTCCGT
LOC_Os07g26110
Os.53561.1.S1_at--668--491Chr07:14988913..14988937 (25 bp)
ATCGACCGTCCGTGTGTGGATGGAT
LOC_Os07g26110
Os.53561.1.S1_at--917--10351Chr07:14988997..14989021 (25 bp)
TTTTTAGTGCTTGCCGGCCGTATAT
LOC_Os07g26110
Os.53561.1.S1_at--1162--4491Chr07:14989013..14989037 (25 bp)
GCCGTATATGTTAGCTGTTGTCTCA
LOC_Os07g26110
Os.53561.1.S1_at--705--8811Chr07:14989028..14989052 (25 bp)
TGTTGTCTCACATCTCCGGAAATTC
LOC_Os07g26110
Os.53561.1.S1_at--929--5591Chr07:14989046..14989070 (25 bp)
GAAATTCAACGTTATCCTCTCAGTG
LOC_Os07g26110
Target Sequence 
TGATCACGGCCATCAGCTCGGTGAGGTTGCTCTCCAGCTCGGCTTGCTCTGCCAAGACGCTCTTCTACCTCATCCTGCTT
GATGTGTTCTACGCAGCCGTGATGGCGTCGGCGACCGGGACAGCGGGGGCCGTGGCGTGGGTGGGNCTGAAGGGGAACTC
CCACACCCGGTGGAACAAGATATGCAACGTCTACGGCAAGTTCTGCCGCCACATCGGCAGCTCCACCTTCCTCGCCCTCA
TCGCCGCCATCGTTCTCGTCCTCCTCGCCTTCCTCAACGCCTACTCCCTCTACCGCCGAAGCCGTTGATTCATTCCCCAT
GAACTTGTTTGCTGCCGCCGCCCCCGGACCGTAGAGTTGCTTGCTTCCGTCGTCGCATCGACCGTCCGTGTGTGGATGGA
TTCTTGTGTTTAATTAGTTTTTGTCCCTAAGTGTTTGAAACATTTGGGTGGTGTGATGTTTTTTTAGTGCTTGCCGGCCG
TATATGTTAGCTGTTGTCTCACATCTCCGGAAATTCAACGTTATCCTCTCAGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53561.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis