Browse Element(s) Details


Os.49082.1.S1_at

Description gb:AK068200.1
DB_XREF= gi:32978218
TID=Os.49082.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.49082 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013140N17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013140N17, full insert sequence.
FL= gb:AK068200.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g277809/11Acetylornithine aminotransferase, mitochondrial precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g27740OsAffx.18957.1.S1_at3/117+16177953..16184448retrotransposon protein, putative, unclassified
LOC_Os07g27750OsAffx.28630.1.S1_at11/117+16190490..16191819expressed protein
LOC_Os07g27760Os.23200.2.S1_x_at11/117+16195086..16204224expressed protein
LOC_Os07g27760Os.23200.2.S1_at11/117+16195086..16204224expressed protein
LOC_Os07g27760Os.23200.1.S1_x_at3/117+16195086..16204224expressed protein
LOC_Os07g27770OsAffx.28632.1.S1_at4/117+16205480..16207506transposon protein, putative, unclassified
LOC_Os07g27780Os.49082.1.S1_at9/117+16207453..16208960Acetylornithine aminotransferase, mitochondrial precursor, putative, expressed
LOC_Os07g27780OsAffx.14529.1.S1_x_at1/117+16207453..16208960Acetylornithine aminotransferase, mitochondrial precursor, putative, expressed
LOC_Os07g27790Os.12568.2.S1_at11/117+16211815..16217498Glutamate-cysteine ligase, chloroplast precursor, putative, expressed
LOC_Os07g27790Os.12568.1.S1_x_at9/117+16211815..16217498Glutamate-cysteine ligase, chloroplast precursor, putative, expressed
LOC_Os07g27800OsAffx.28632.1.S1_at11/117+16218413..16222270transposon protein, putative, unclassified
LOC_Os07g27810Os.37225.1.S1_at10/117+16224811..16228973fiber protein Fb34, putative, expressed
LOC_Os07g27810OsAffx.25952.1.S1_s_at2/117+16224811..16228973fiber protein Fb34, putative, expressed
LOC_Os07g27820OsAffx.20354.1.S1_at3/117+16233830..16236759retrotransposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006561biological_processproline biosynthesis
GO:0042538biological_processhyperosmotic salinity response
GO:0005739cellular_componentmitochondrion
GO:0003992molecular_functionacetylornithine transaminase activity
GO:0004587molecular_functionornithine-oxo-acid transaminase activity
GO:0008453molecular_functionalanine-glyoxylate transaminase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49082.1.S1_at--79--9251Chr07:16207670..16207694 (25 bp)
TCCTTTGGTCGATGCATGCTTGGAC
LOC_Os07g27780
Os.49082.1.S1_at--926--4051Chr07:16207661..16207685 (25 bp)
CGATGCATGCTTGGACCGCGGTGTC
LOC_Os07g27780
Os.49082.1.S1_at--665--6191Chr07:16207604..16207628 (25 bp)
GAGGCAATGTTGCTGATTTTTTACA
LOC_Os07g27780
Os.49082.1.S1_at--617--6671Chr07:16207596..16207620 (25 bp)
GTTGCTGATTTTTTACAGAGTGAAA
LOC_Os07g27780
Os.49082.1.S1_at--297--7371Chr07:16207577..16207601 (25 bp)
GTGAAATATATCTCATCTTCCTGCT
LOC_Os07g27780
Os.49082.1.S1_at--842--8791Chr07:16207509..16207533 (25 bp)
TGTTCGGATCCTCTTAGTGTCCAGC
LOC_Os07g27780
Os.49082.1.S1_at--88--9451Chr07:16207506..16207530 (25 bp)
TCGGATCCTCTTAGTGTCCAGCGAT
LOC_Os07g27780
Os.49082.1.S1_at--424--571Chr07:16207502..16207526 (25 bp)
ATCCTCTTAGTGTCCAGCGATCACA
LOC_Os07g27780
Os.49082.1.S1_at--670--7271Chr07:16207491..16207515 (25 bp)
GTCCAGCGATCACACATATATTTTT
LOC_Os07g27780
Os.49082.1.S1_at--605--10211NONE
TATTATCTAATACTACTCTGTCTTA
NONE
Os.49082.1.S1_at--322--3091NONE
AATACTACTCTGTCTTATAATACTA
NONE
Target Sequence 
TCCTTTGGTCGATGCATGCTTGGACCGCGGTGTCATAGTGCTGACAGCCGGGAAAGGCAATGTTGTGAGGCAATGTTGCT
GATTTTTTACAGAGTGAAATATATCTCATCTTCCTGCTTGCTCCTTCATCATTTTGNNCTGGTACAAGAGTACTTGTAGC
NTGTTCGGATCCTCTTAGTGTCCAGCGATCACACATATATTTTTCTGGTNCCACATACNNNNNNNNNNNNNTCNTNNNNN
NTNNNNCNACCNAANCTCNACNTCNTTNNTNNTANANNAANNAANNNCNCACNNTGGNNTTNNCNNCCNNAANNNCNANN
CNANNNGNNNNTNTANTNCNTNTNNATCCCCNTATATATATTATCTAATACTACTCTGTCTTATAATACTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49082.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis