Browse Element(s) Details


OsAffx.28632.1.S1_at

Description tigr:9635.m02695
TID=OsAffx.28632.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2780011/11transposon protein, putative, unclassified
LOC_Os07g277704/11transposon protein, putative, unclassified
LOC_Os12g247301/11Zinc knuckle family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g27760Os.23200.2.S1_x_at11/117+16195086..16204224expressed protein
LOC_Os07g27760Os.23200.2.S1_at11/117+16195086..16204224expressed protein
LOC_Os07g27760Os.23200.1.S1_x_at3/117+16195086..16204224expressed protein
LOC_Os07g27770OsAffx.28632.1.S1_at4/117+16205480..16207506transposon protein, putative, unclassified
LOC_Os07g27780Os.49082.1.S1_at9/117+16207453..16208960Acetylornithine aminotransferase, mitochondrial precursor, putative, expressed
LOC_Os07g27780OsAffx.14529.1.S1_x_at1/117+16207453..16208960Acetylornithine aminotransferase, mitochondrial precursor, putative, expressed
LOC_Os07g27790Os.12568.2.S1_at11/117+16211815..16217498Glutamate-cysteine ligase, chloroplast precursor, putative, expressed
LOC_Os07g27790Os.12568.1.S1_x_at9/117+16211815..16217498Glutamate-cysteine ligase, chloroplast precursor, putative, expressed
LOC_Os07g27800OsAffx.28632.1.S1_at11/117+16218413..16222270transposon protein, putative, unclassified
LOC_Os07g27810Os.37225.1.S1_at10/117+16224811..16228973fiber protein Fb34, putative, expressed
LOC_Os07g27810OsAffx.25952.1.S1_s_at2/117+16224811..16228973fiber protein Fb34, putative, expressed
LOC_Os07g27820OsAffx.20354.1.S1_at3/117+16233830..16236759retrotransposon protein, putative, unclassified
LOC_Os07g27834Os.46610.1.A1_x_at2/117+16237966..16246137retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g27834OsAffx.3347.1.S1_at1/117+16237966..16246137retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g27834OsAffx.27810.1.S1_x_at1/117+16237966..16246137retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28632.1.S1_at--597--6732Chr07:16220014..16220038 (25 bp)
GTTCTATACACGTGCAATGTTTGAG
LOC_Os07g27800
OsAffx.28632.1.S1_at--791--3012Chr07:16220050..16220074 (25 bp)
AATGCTATACAGAGCTACCAAATAC
LOC_Os07g27800
OsAffx.28632.1.S1_at--362--7332Chr07:16220111..16220135 (25 bp)
GTGCAGCTAATTTTGGATGATGACA
LOC_Os07g27800
OsAffx.28632.1.S1_at--887--6613Chr07:16220181..16220205 (25 bp)
GTTGTGCCTGCAAAAAATTTCAAAG
LOC_Os07g27800
OsAffx.28632.1.S1_at--351--10851Chr07:16220449..16220471 (23 bp)
TTGGATTGTGATGATCCCACCAGGT
LOC_Os07g27800
OsAffx.28632.1.S1_at--51--1711Chr07:16222064..16222088 (25 bp)
ACCAAGTGCAAACTCCCGCGACGTG
LOC_Os07g27800
OsAffx.28632.1.S1_at--1128--2692Chr07:16222144..16222168 (25 bp)
AAGCTTGCCACTGCCGACAAGAACT
LOC_Os07g27800
OsAffx.28632.1.S1_at--276--5471Chr07:16222164..16222188 (25 bp)
GAACTACTAGTGCTAACCTTGTCGT
LOC_Os07g27800
OsAffx.28632.1.S1_at--1040--1111Chr07:16222172..16222196 (25 bp)
AGTGCTAACCTTGTCGTGGGCATCC
LOC_Os07g27800
OsAffx.28632.1.S1_at--534--551Chr07:16222193..16222217 (25 bp)
ATCCCCATGGCTGTGCCTAGCTTTG
LOC_Os07g27800
OsAffx.28632.1.S1_at--227--3691Chr07:16222213..16222237 (25 bp)
CTTTGCTAGTGATTACACGATTGAT
LOC_Os07g27800
Target Sequence 
GTTCTATACACGTGCAATGTTTGAGGAGTTTCAAGAAATGCTATACAGAGCTACCAAATACAAAACAATAAATGGGCCGG
AACCTGGATCATATTTTGTGCAGCTAATTTTGGATGATGACAACAAGAAATTCTTGGTTCATTATGACATAAACAATGAA
ANCTACAGTTGTGCCTGCAAAAAATTTCAAAGGGATAAGATANNNNNTNGACANGNNNTAAAAANAAANANNNNNGTGAT
NGCNGNANNNTNNAAGAAGAAAAAACTTGATGATACCAGCTGTTTGGATTGTGATGATCCCACCAGGTGGGGACACAGGA
TACTGGATTTTGAAAAGGCAAAATCCAAGGTGGAGGTGACAGTCTCCGGCGAGGTCAGGTACCAGGCGCACTACACCAAG
TGCAAACTCCCGCGACGTGCCCGCTCAAGCTGCAGCTTGCGCCGCCGGCGGTGGTGTTCCGGAAGGTCAAGTGCAAGCTT
GCCACTGCCGACAAGAACTACTAGTGCTAACCTTGTCGTGGGCATCCCCATGGCTGTGCCTAGCTTTGCTAGTGATTACA
CGATTGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28632.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis