Browse Element(s) Details


Os.49771.1.S1_at

Description gb:AY062182.1
DB_XREF= gi:37542674
GEN=HAP3b
TID=Os.49771.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49771 (NCBI UniGene Cluster)
DEF=Oryza sativa (indica cultivar-group) HAP3-like transcriptional-activator (HAP3b) mRNA, complete cds.
PROD=HAP3-like transcriptional-activator
FL= gb:AY062182.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g077409/11Histone-like transcription factor and archaeal histone family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g07710OsAffx.29086.1.S1_at11/118+4305440..4305727hypothetical protein
LOC_Os08g07720OsAffx.29087.1.S1_x_at11/118+4309816..4312201Transferase family protein, expressed
LOC_Os08g07730OsAffx.16883.1.S1_x_at11/118+4319543..4323424Transferase family protein, expressed
LOC_Os08g07730OsAffx.13115.1.S1_at2/118+4319543..4323424Transferase family protein, expressed
LOC_Os08g07730Os.46622.1.S1_x_at1/118+4319543..4323424Transferase family protein, expressed
LOC_Os08g07740Os.49771.1.S1_at9/118+4327373..4329090Histone-like transcription factor and archaeal histone family protein, expressed
LOC_Os08g07740OsAffx.23994.1.S1_x_at1/118+4327373..4329090Histone-like transcription factor and archaeal histone family protein, expressed
LOC_Os08g07760Os.49150.1.S1_at11/118+4337827..4344158BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed
LOC_Os08g07760Os.51084.1.S1_x_at3/118+4337827..4344158BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed
LOC_Os08g07760Os.12668.1.S1_s_at1/118+4337827..4344158BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed
LOC_Os08g07774Os.51084.1.S1_x_at11/118+4346471..4355077NB-ARC domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49771.1.S1_at--740--4691Chr08:4327648..4327672 (25 bp)
GCGGCGTCAGGGAACAAGGCGTACT
LOC_Os08g07740
Os.49771.1.S1_at--514--3371Chr08:4327528..4327549 (22 bp)
CACCTCCATGGCGTGCAATGGTGAA
LOC_Os08g07740
Os.49771.1.S1_at--131--851NONE
ATGGCGTGCAATGGTGAAGACTAAA
NONE
Os.49771.1.S1_at--556--2711NONE
AAGAGGAGTACTAATTAGCTAGCTA
NONE
Os.49771.1.S1_at--1082--3131Chr08:4327483..4327507 (25 bp)
AATTAGCTAGCTAGGCACACGCGTA
LOC_Os08g07740
Os.49771.1.S1_at--889--3711Chr08:4327477..4327501 (25 bp)
CTAGCTAGGCACACGCGTAGTTTTA
LOC_Os08g07740
Os.49771.1.S1_at--615--8231Chr08:4327470..4327494 (25 bp)
GGCACACGCGTAGTTTTATTATTAC
LOC_Os08g07740
Os.49771.1.S1_at--196--9971Chr08:4327440..4327464 (25 bp)
TACCGCGTTAATTAATTGTTGATGC
LOC_Os08g07740
Os.49771.1.S1_at--1013--6331Chr08:4327420..4327444 (25 bp)
GATGCTGATGCTGTTTAAAATTGAT
LOC_Os08g07740
Os.49771.1.S1_at--739--2451Chr08:4327404..4327428 (25 bp)
AAAATTGATTCTCCTTTTGCATGAA
LOC_Os08g07740
Os.49771.1.S1_at--5--10791Chr08:4327403..4327424 (22 bp)
TTGATTCTCCTTTTGCATGAAAATG
LOC_Os08g07740
Target Sequence 
GCGGCGTCAGGGAACAAGGCGTACTGCGGCGGCGACGGGTCGAGGGTGATGGAGTTCGAGGGCATCGGCGGCGAGGAGGA
GAGCGGAGGCGGAGGCGGCGGCGGCGGCGGCGAGAGGGGGTTCGCCGGCCACCTCCATGGCGTGCAATGGTGAAGACTAA
AGAGGAGTACTAATTAGCTAGCTAGGCACACGCGTAGTTTTATTATTACTTAATTACCGCGTTAATTAATTGTTGATGCT
GATGCTGTTTAAAATTGATTCTCCTTTTGCATGAAAATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49771.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis