Browse Element(s) Details

Os.49150.1.S1_at

Description

gb:AY463361.1
DB_XREF= gi:38679442
GEN=BISERK1
TID=Os.49150.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49150 (NCBI UniGene Cluster)
DEF=Oryza sativa (indica cultivar-group) benzothiadiazole-induced somatic embryogenesis receptor kinase 1 (BISERK1) mRNA, complete cds.
PROD=benzothiadiazole-induced somatic embryogenesisreceptor kinase 1
FL= gb:AY463361.1 gb:AK103038.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os08g07760	11/11	BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os08g07730	OsAffx.16883.1.S1_x_at	11/11	8	+	4319543..4323424	Transferase family protein, expressed
LOC_Os08g07730	OsAffx.13115.1.S1_at	2/11	8	+	4319543..4323424	Transferase family protein, expressed
LOC_Os08g07730	Os.46622.1.S1_x_at	1/11	8	+	4319543..4323424	Transferase family protein, expressed
LOC_Os08g07740	Os.49771.1.S1_at	9/11	8	+	4327373..4329090	Histone-like transcription factor and archaeal histone family protein, expressed
LOC_Os08g07740	OsAffx.23994.1.S1_x_at	1/11	8	+	4327373..4329090	Histone-like transcription factor and archaeal histone family protein, expressed
LOC_Os08g07760	Os.49150.1.S1_at	11/11	8	+	4337827..4344158	BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed
LOC_Os08g07760	Os.51084.1.S1_x_at	3/11	8	+	4337827..4344158	BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed
LOC_Os08g07760	Os.12668.1.S1_s_at	1/11	8	+	4337827..4344158	BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed
LOC_Os08g07774	Os.51084.1.S1_x_at	11/11	8	+	4346471..4355077	NB-ARC domain containing protein, expressed
LOC_Os08g07790	OsAffx.16884.1.S1_at	11/11	8	+	4357055..4359160	CRS2-associated factor 1, putative, expressed
LOC_Os08g07800	OsAffx.5741.1.S1_at	10/11	8	+	4359622..4360295	hypothetical protein
LOC_Os08g07810	OsAffx.29088.1.S1_at	10/11	8	+	4364678..4366586	Strictosidine synthase family protein

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Gene Ontology Classification

GO id	Type	Name
GO:0006468	biological_process	protein amino acid phosphorylation
GO:0009742	biological_process	brassinosteroid mediated signaling
GO:0009793	biological_process	embryonic development (sensu Magnoliophyta)
GO:0016049	biological_process	cell growth
GO:0005768	cellular_component	endosome
GO:0005886	cellular_component	plasma membrane
GO:0004672	molecular_function	protein kinase activity
GO:0004674	molecular_function	protein serine/threonine kinase activity
GO:0004675	molecular_function	transmembrane receptor protein serine/threonine kinase activity
GO:0005515	molecular_function	protein binding
GO:0005524	molecular_function	ATP binding
GO:0016301	molecular_function	kinase activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.49150.1.S1_at--990--1053	1	Chr08:4343576..4343600 (25 bp)	TTCATGCGGTTGAGCTATCAGGGCC	LOC_Os08g07760
Os.49150.1.S1_at--739--165	2	Chr08:4343612..4343636 (25 bp)	AGCGCACTGGTAGTTTGCTGCTAAT	LOC_Os08g07760
Os.49150.1.S1_at--606--911	2	Chr08:4343627..4343651 (25 bp)	TGCTGCTAATTCTTGTCCGTCGGAA	LOC_Os08g07760
Os.49150.1.S1_at--885--1033	1	Chr08:4343660..4343684 (25 bp)	TTTATCAGCCATCCTAGTCGAATCG	LOC_Os08g07760
Os.49150.1.S1_at--1118--721	1	Chr08:4343676..4343700 (25 bp)	GTCGAATCGCCATTTGTTCATACCA	LOC_Os08g07760
Os.49150.1.S1_at--227--675	2	Chr08:4343691..4343715 (25 bp)	GTTCATACCAACCAATTGGCCCAAT	LOC_Os08g07760
Os.49150.1.S1_at--1097--1071	1	Chr08:4343747..4343771 (25 bp)	TTGCTTGATTTGCTCCTTGATGTGC	LOC_Os08g07760
Os.49150.1.S1_at--981--77	1	Chr08:4343766..4343790 (25 bp)	ATGTGCCGCCTTGGATATCGGTGAC	LOC_Os08g07760
Os.49150.1.S1_at--967--547	1	Chr08:4343813..4343837 (25 bp)	GAACTATTGTCCTGAAGCTTGCAAG	LOC_Os08g07760
Os.49150.1.S1_at--1069--393	1	Chr08:4343898..4343922 (25 bp)	CGGCTGTTTGCTGGACCTGTGAAAA	LOC_Os08g07760
Os.49150.1.S1_at--1012--699	2	Chr08:4343925..4343949 (25 bp)	GTACTGACTGGTGACATCTAACTAT	LOC_Os08g07760

Target Sequence

TTCATGCGGTTGAGCTATCAGGGCCGAGGTGATGACAGCGCACTGGTAGTTTGCTGCTAATTCTTGTCCGTCGGAAGAGT
GATTTTTATCAGCCATCCTAGTCGAATCGCCATTTGTTCATACCAACCAATTGGCCCAATGTAGCCAGCTACAACTATGT
TTTGATGTATATTGCTTGATTTGCTCCTTGATGTGCCGCCTTGGATATCGGTGACCNGAAAACAGCAGGAGCCCAAGGAA
CTATTGTCCTGAAGCTTGCAAGTTGCAACAAGATCCCAGTATGTTAAAGCTCACAAGGTAGCAGCTAGGAGTGAGGTTGC
TGCGGCTGTTTGCTGGACCTGTGAAAATTGTACTGACTGGTGACATCTAACTAT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis