Browse Element(s) Details


OsAffx.5741.1.S1_at

Description tigr:9636.m00720
TID=OsAffx.5741.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0780010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g07760Os.49150.1.S1_at11/118+4337827..4344158BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed
LOC_Os08g07760Os.51084.1.S1_x_at3/118+4337827..4344158BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed
LOC_Os08g07760Os.12668.1.S1_s_at1/118+4337827..4344158BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed
LOC_Os08g07774Os.51084.1.S1_x_at11/118+4346471..4355077NB-ARC domain containing protein, expressed
LOC_Os08g07790OsAffx.16884.1.S1_at11/118+4357055..4359160CRS2-associated factor 1, putative, expressed
LOC_Os08g07800OsAffx.5741.1.S1_at10/118+4359622..4360295hypothetical protein
LOC_Os08g07810OsAffx.29088.1.S1_at10/118+4364678..4366586Strictosidine synthase family protein
LOC_Os08g07820OsAffx.16885.1.S1_at11/118+4371841..4372919hypothetical protein
LOC_Os08g07830Os.27849.1.S1_at11/118+4379424..4382687expressed protein
LOC_Os08g07840Os.15037.1.S1_a_at11/118+4384706..4394413polI-like DNA polymerase, putative, expressed
LOC_Os08g07840Os.15037.1.S2_at11/118+4384706..4394413polI-like DNA polymerase, putative, expressed
LOC_Os08g07840Os.15037.2.S1_x_at10/118+4384706..4394413polI-like DNA polymerase, putative, expressed
LOC_Os08g07840Os.15037.2.S1_at9/118+4384706..4394413polI-like DNA polymerase, putative, expressed
LOC_Os08g07840Os.12123.1.S1_x_at2/118+4384706..4394413polI-like DNA polymerase, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5741.1.S1_at--1153--3531NONE
CATCCCATCACTGGAATAAAGGCAA
NONE
OsAffx.5741.1.S1_at--501--9691Chr08:4359722..4359741 (20 bp)
TCACTGGAATAAAGGCAAGGTTGCT
LOC_Os08g07800
OsAffx.5741.1.S1_at--510--3091Chr08:4359715..4359739 (25 bp)
AATAAAGGCAAGGTTGCTTCTTGCT
LOC_Os08g07800
OsAffx.5741.1.S1_at--369--10731Chr08:4359702..4359726 (25 bp)
TTGCTTCTTGCTGGAATGCTGGTTG
LOC_Os08g07800
OsAffx.5741.1.S1_at--411--4911Chr08:4359700..4359724 (25 bp)
GCTTCTTGCTGGAATGCTGGTTGAA
LOC_Os08g07800
OsAffx.5741.1.S1_at--315--10711Chr08:4359695..4359719 (25 bp)
TTGCTGGAATGCTGGTTGAAGACTT
LOC_Os08g07800
OsAffx.5741.1.S1_at--714--4711Chr08:4359693..4359717 (25 bp)
GCTGGAATGCTGGTTGAAGACTTGA
LOC_Os08g07800
OsAffx.5741.1.S1_at--592--9111Chr08:4359686..4359710 (25 bp)
TGCTGGTTGAAGACTTGAAGATGGA
LOC_Os08g07800
OsAffx.5741.1.S1_at--879--3231Chr08:4359657..4359681 (25 bp)
CAAGAAGATTTGTGTTTTCCCATGC
LOC_Os08g07800
OsAffx.5741.1.S1_at--474--5351Chr08:4359654..4359678 (25 bp)
GAAGATTTGTGTTTTCCCATGCTTG
LOC_Os08g07800
OsAffx.5741.1.S1_at--1141--1251Chr08:4359652..4359676 (25 bp)
AGATTTGTGTTTTCCCATGCTTGGA
LOC_Os08g07800
Target Sequence 
CATCCCATCACTGGAATAAAGGCAAGGTTGCTTCTTGCTGGAATGCTGGTTGAAGACTTGAAGATGGATAGACAAGAAGA
TTTGTGTTTTCCCATGCTTGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5741.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis