Browse Element(s) Details


Os.15037.1.S1_a_at

Description gb:AK110978.1
DB_XREF= gi:32996187
TID=Os.15037.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.15037 (NCBI UniGene Cluster)
UG_TITLE=MRNA for PolI-like DNA polymerase, complete cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-174-C06, full insert sequence.
FL= gb:AB047689.2 gb:AK103236.1 gb:AK110978.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0784011/11polI-like DNA polymerase, putative, expressed
LOC_Os08g0785011/11polI-like DNA polymerase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g07800OsAffx.5741.1.S1_at10/118+4359622..4360295hypothetical protein
LOC_Os08g07810OsAffx.29088.1.S1_at10/118+4364678..4366586Strictosidine synthase family protein
LOC_Os08g07820OsAffx.16885.1.S1_at11/118+4371841..4372919hypothetical protein
LOC_Os08g07830Os.27849.1.S1_at11/118+4379424..4382687expressed protein
LOC_Os08g07840Os.15037.1.S1_a_at11/118+4384706..4394413polI-like DNA polymerase, putative, expressed
LOC_Os08g07840Os.15037.1.S2_at11/118+4384706..4394413polI-like DNA polymerase, putative, expressed
LOC_Os08g07840Os.15037.2.S1_x_at10/118+4384706..4394413polI-like DNA polymerase, putative, expressed
LOC_Os08g07840Os.15037.2.S1_at9/118+4384706..4394413polI-like DNA polymerase, putative, expressed
LOC_Os08g07840Os.12123.1.S1_x_at2/118+4384706..4394413polI-like DNA polymerase, putative, expressed
LOC_Os08g07850Os.54720.1.S1_at11/118+4400776..4410901polI-like DNA polymerase, putative, expressed
LOC_Os08g07850Os.15037.1.S1_a_at11/118+4400776..4410901polI-like DNA polymerase, putative, expressed
LOC_Os08g07850Os.12123.1.S1_x_at7/118+4400776..4410901polI-like DNA polymerase, putative, expressed
LOC_Os08g07850Os.15037.2.S1_x_at6/118+4400776..4410901polI-like DNA polymerase, putative, expressed
LOC_Os08g07850OsAffx.661.1.S1_x_at1/118+4400776..4410901polI-like DNA polymerase, putative, expressed
LOC_Os08g07860OsAffx.32034.1.S1_at11/118+4415086..4416634hypothetical protein
LOC_Os08g07870NANA8+4418641..4423644retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0006260biological_processDNA replication
GO:0005739cellular_componentmitochondrion
GO:0009507cellular_componentchloroplast
GO:0003677molecular_functionDNA binding
GO:0003887molecular_functionDNA-directed DNA polymerase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15037.1.S1_a_at--208--2572Chr08:4405530..4405554 (25 bp)
AACTGGGAAGGTGTCAATGAAAACT
LOC_Os08g07850
Os.15037.1.S1_a_at--467--7972Chr08:4405475..4405499 (25 bp)
GGATCTGAAGGGAAAACCATATCTA
LOC_Os08g07850
Os.15037.1.S1_a_at--1034--5512Chr08:4405464..4405488 (25 bp)
GAAAACCATATCTATCGAGCCAGTC
LOC_Os08g07850
Os.15037.1.S1_a_at--620--6052Chr08:4405415..4405439 (25 bp)
GAGTTGTGGATTTGCTATTCCTCAC
LOC_Os08g07850
Os.15037.1.S1_a_at--834--10712Chr08:4405404..4405428 (25 bp)
TTGCTATTCCTCACTAGATTCAATG
LOC_Os08g07850
Os.15037.1.S1_a_at--278--7252Chr08:4405270..4405294 (25 bp)
GTCCCTTTGGTGCTCTTCTTGTAAA
LOC_Os08g07850
Os.15037.1.S1_a_at--1011--10752Chr08:4405222..4405246 (25 bp)
TTGACCGTGCATACCTTTCGGAGAT
LOC_Os08g07850
Os.15037.1.S1_a_at--1071--7312Chr08:4405216..4405240 (25 bp)
GTGCATACCTTTCGGAGATTGAGAA
LOC_Os08g07850
Os.15037.1.S1_a_at--60--3132Chr08:4405171..4405195 (25 bp)
AATTAGCAGCGGATAAGTTTCGGAA
LOC_Os08g07850
Os.15037.1.S1_a_at--943--7392Chr08:4405099..4405123 (25 bp)
GTGATAATCAAATTCGCCAACTTTT
LOC_Os08g07850
Os.15037.1.S1_a_at--478--372Chr08:4405093..4405117 (25 bp)
ATCAAATTCGCCAACTTTTCTTTGG
LOC_Os08g07850
Target Sequence 
AACTGGGAAGGTGTCAATGAAAACTATNTTTGGNCGGAAAAANGTTAGAAAANATGGATCTGAAGGGAAAACCATATCTA
TCGAGCCAGTCNAAAAGTTACAAAGGGAGGATAGAGAGTTGTGGATTTGCTATTCCTCACTAGATTCAATGAGTACATTG
AAGCTTTATGAAAGCTTGAAAAACAAGCTTGAAGCAAAGGAATGGATTTTCGATGNTTGTCCTAGAGGAACAATGTATGA
TTTCTACGAAGAGTATTGGCGTCCCTTTGGTGCTCTTCTTGTAAAGATGGAAACAGAGGGANTGNTTGTTGACCGTGCAT
ACCTTTCGGAGATTGAGAAANCTGCTGTTNNTGAACGANAATTAGCAGCGGATAAGTTTCGGAAATGGGCATCTAAGCAT
TGTCCTGATGCCAAGTACATGAATGTGAATAGTGATAATCAAATTCGCCAACTTTTCTTTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15037.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis