Browse Element(s) Details


OsAffx.16885.1.S1_at

Description tigr:9636.m00722
TID=OsAffx.16885.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0782011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g07774Os.51084.1.S1_x_at11/118+4346471..4355077NB-ARC domain containing protein, expressed
LOC_Os08g07790OsAffx.16884.1.S1_at11/118+4357055..4359160CRS2-associated factor 1, putative, expressed
LOC_Os08g07800OsAffx.5741.1.S1_at10/118+4359622..4360295hypothetical protein
LOC_Os08g07810OsAffx.29088.1.S1_at10/118+4364678..4366586Strictosidine synthase family protein
LOC_Os08g07820OsAffx.16885.1.S1_at11/118+4371841..4372919hypothetical protein
LOC_Os08g07830Os.27849.1.S1_at11/118+4379424..4382687expressed protein
LOC_Os08g07840Os.15037.1.S1_a_at11/118+4384706..4394413polI-like DNA polymerase, putative, expressed
LOC_Os08g07840Os.15037.1.S2_at11/118+4384706..4394413polI-like DNA polymerase, putative, expressed
LOC_Os08g07840Os.15037.2.S1_x_at10/118+4384706..4394413polI-like DNA polymerase, putative, expressed
LOC_Os08g07840Os.15037.2.S1_at9/118+4384706..4394413polI-like DNA polymerase, putative, expressed
LOC_Os08g07840Os.12123.1.S1_x_at2/118+4384706..4394413polI-like DNA polymerase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16885.1.S1_at--293--5651Chr08:4371897..4371921 (25 bp)
GACAGAGGAAGCAACAACAGGAGAA
LOC_Os08g07820
OsAffx.16885.1.S1_at--675--3911Chr08:4372739..4372763 (25 bp)
CGGCGCATTGAGAGGCTATGGCCCC
LOC_Os08g07820
OsAffx.16885.1.S1_at--436--10771Chr08:4372746..4372770 (25 bp)
TTGAGAGGCTATGGCCCCATGCGAC
LOC_Os08g07820
OsAffx.16885.1.S1_at--744--4431Chr08:4372812..4372836 (25 bp)
GCCATCACCCCGAGTAGGTGTGTCG
LOC_Os08g07820
OsAffx.16885.1.S1_at--747--4171Chr08:4372821..4372845 (25 bp)
CCGAGTAGGTGTGTCGTCCCTAAAG
LOC_Os08g07820
OsAffx.16885.1.S1_at--852--7471Chr08:4372829..4372853 (25 bp)
GTGTGTCGTCCCTAAAGTGGTGCCG
LOC_Os08g07820
OsAffx.16885.1.S1_at--858--8711Chr08:4372832..4372856 (25 bp)
TGTCGTCCCTAAAGTGGTGCCGCTC
LOC_Os08g07820
OsAffx.16885.1.S1_at--1044--2311Chr08:4372842..4372866 (25 bp)
AAAGTGGTGCCGCTCGCTAGATCTG
LOC_Os08g07820
OsAffx.16885.1.S1_at--139--3791Chr08:4372854..4372878 (25 bp)
CTCGCTAGATCTGGCAAACCCAAGG
LOC_Os08g07820
OsAffx.16885.1.S1_at--1129--472Chr08:4375905..4375929 (25 bp)
ATCTGGCAAACCCAAGGTCGGATCT
NONE
OsAffx.16885.1.S1_at--333--8511Chr08:4372865..4372889 (25 bp)
TGGCAAACCCAAGGTCGGATCTATC
LOC_Os08g07820
Target Sequence 
GACAGAGGAAGCAACAACAGGAGAAGCATCGTCGAGGCATGGGGCGAGGTGCAGGTGGAGCGGCGCATTGAGAGGCTATG
GCCCCATGCGACGCCCTCACATCCCATGCGTGACGGCGGCGGTTGCTGGCGAGGCCATCACCCCGAGTAGGTGTGTCGTC
CCTAAAGTGGTGCCGCTCGCTAGATCTGGCAAACCCAAGGTCGGATCTATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16885.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis