Browse Element(s) Details


OsAffx.29088.1.S1_at

Description tigr:9636.m00721
TID=OsAffx.29088.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Strictosidine synthase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0781010/11Strictosidine synthase family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g07760Os.49150.1.S1_at11/118+4337827..4344158BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed
LOC_Os08g07760Os.51084.1.S1_x_at3/118+4337827..4344158BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed
LOC_Os08g07760Os.12668.1.S1_s_at1/118+4337827..4344158BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed
LOC_Os08g07774Os.51084.1.S1_x_at11/118+4346471..4355077NB-ARC domain containing protein, expressed
LOC_Os08g07790OsAffx.16884.1.S1_at11/118+4357055..4359160CRS2-associated factor 1, putative, expressed
LOC_Os08g07800OsAffx.5741.1.S1_at10/118+4359622..4360295hypothetical protein
LOC_Os08g07810OsAffx.29088.1.S1_at10/118+4364678..4366586Strictosidine synthase family protein
LOC_Os08g07820OsAffx.16885.1.S1_at11/118+4371841..4372919hypothetical protein
LOC_Os08g07830Os.27849.1.S1_at11/118+4379424..4382687expressed protein
LOC_Os08g07840Os.15037.1.S1_a_at11/118+4384706..4394413polI-like DNA polymerase, putative, expressed
LOC_Os08g07840Os.15037.1.S2_at11/118+4384706..4394413polI-like DNA polymerase, putative, expressed
LOC_Os08g07840Os.15037.2.S1_x_at10/118+4384706..4394413polI-like DNA polymerase, putative, expressed
LOC_Os08g07840Os.15037.2.S1_at9/118+4384706..4394413polI-like DNA polymerase, putative, expressed
LOC_Os08g07840Os.12123.1.S1_x_at2/118+4384706..4394413polI-like DNA polymerase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009821biological_processalkaloid biosynthesis
GO:0016844molecular_functionstrictosidine synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29088.1.S1_at--686--4571Chr08:4365496..4365520 (25 bp)
GCGCGGACGGCGTCCCGTTCAACTT
LOC_Os08g07810
OsAffx.29088.1.S1_at--532--7091Chr08:4365507..4365531 (25 bp)
GTCCCGTTCAACTTCGTCAATGGCA
LOC_Os08g07810
OsAffx.29088.1.S1_at--999--6751Chr08:4365512..4365536 (25 bp)
GTTCAACTTCGTCAATGGCATCGAC
LOC_Os08g07810
OsAffx.29088.1.S1_at--584--9951Chr08:4365585..4366104 (25 bp)
TACCCACGCCGGTTTAACAGCGAGA
LOC_Os08g07810
OsAffx.29088.1.S1_at--552--4491NONE
GCCGGTTTAACAGCGAGATCATGAT
NONE
OsAffx.29088.1.S1_at--1037--6431Chr08:4366103..4366127 (25 bp)
GATCATGATGAATGCCGATGCGACG
LOC_Os08g07810
OsAffx.29088.1.S1_at--539--5731Chr08:4366124..4366148 (25 bp)
GACGGCGCGGCTGCTAAAGTACGAC
LOC_Os08g07810
OsAffx.29088.1.S1_at--715--8331Chr08:4366132..4366156 (25 bp)
GGCTGCTAAAGTACGACGCGGCGAC
LOC_Os08g07810
OsAffx.29088.1.S1_at--188--9651Chr08:4366174..4366198 (25 bp)
TCAGGGCCGGGCTTCCGTACGCCAA
LOC_Os08g07810
OsAffx.29088.1.S1_at--993--3851Chr08:4366485..4366509 (25 bp)
CTGACGGCTGCCAAGGGTGTGACGC
LOC_Os08g07810
OsAffx.29088.1.S1_at--159--7571Chr08:4366529..4366553 (25 bp)
GGGCGGGAAATTGTGGCTCGGCTCT
LOC_Os08g07810
Target Sequence 
GCGCGGACGGCGTCCCGTTCAACTTCGTCAATGGCATCGACGTCGACCAGGCCACCGGTGATGTCTACTTCACCGATAGT
AGCACCACCTACCCACGCCGGTTTAACAGCGAGATCATGATGAATGCCGATGCGACGGCGCGGCTGCTAAAGTACGACGC
GGCGACGAAGCGGGTGACCGTGCTCAGGGCCGGGCTTCCGTACGCCAATGGCGTGGCCGTCAGCCGCGACGGGAGCCACG
CCGTGGTGGCGCACACGGTGCCGTGCCAGGCGTTCCGGTACTGGATCAAGGGGCCCAACGCCGGCGAGTACGAGCTCCTC
GCCGACCTGCCGGGTTACCCCGACAACGTCCGGCGAGACGCCAATGGGGGATACTGGGTGGCGCTCAACCAGGAGAAGGC
GCGGCTCGACGCCACCGCGGCGGCGGCGGTGGCTCCTCCGGCGAAGCACCTCGTCGGCGTCCGGCTCGACGGCGATGGCG
TCGAGGTCGAGGAGCTGACGGCTGCCAAGGGTGTGACGCTCAGTGAGGTTGTGGAGAGGGGCGGGAAATTGTGGCTCGGC
TCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29088.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis