Browse Element(s) Details


OsAffx.16884.1.S1_at

Description tigr:9636.m00719
TID=OsAffx.16884.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Uncharacterised protein family, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0779011/11CRS2-associated factor 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g07760Os.49150.1.S1_at11/118+4337827..4344158BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed
LOC_Os08g07760Os.51084.1.S1_x_at3/118+4337827..4344158BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed
LOC_Os08g07760Os.12668.1.S1_s_at1/118+4337827..4344158BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed
LOC_Os08g07774Os.51084.1.S1_x_at11/118+4346471..4355077NB-ARC domain containing protein, expressed
LOC_Os08g07790OsAffx.16884.1.S1_at11/118+4357055..4359160CRS2-associated factor 1, putative, expressed
LOC_Os08g07800OsAffx.5741.1.S1_at10/118+4359622..4360295hypothetical protein
LOC_Os08g07810OsAffx.29088.1.S1_at10/118+4364678..4366586Strictosidine synthase family protein
LOC_Os08g07820OsAffx.16885.1.S1_at11/118+4371841..4372919hypothetical protein
LOC_Os08g07830Os.27849.1.S1_at11/118+4379424..4382687expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16884.1.S1_at--677--6691Chr08:4358192..4358213 (22 bp)
GTTCCTGTTTTGACGAAGCTAGCCA
LOC_Os08g07790
OsAffx.16884.1.S1_at--918--7671Chr08:4358298..4358322 (25 bp)
GGGTATTACGCTAGTCTTGTTCCAA
LOC_Os08g07790
OsAffx.16884.1.S1_at--209--3631Chr08:4358313..4358337 (25 bp)
CTTGTTCCAATGGTTCGGGATGCCT
LOC_Os08g07790
OsAffx.16884.1.S1_at--992--10611Chr08:4358326..4358350 (25 bp)
TTCGGGATGCCTTTTTGACTGATGA
LOC_Os08g07790
OsAffx.16884.1.S1_at--296--6051Chr08:4358349..4358373 (25 bp)
GAGTTGGTCCGGATAGATTCTAAAG
LOC_Os08g07790
OsAffx.16884.1.S1_at--397--3171Chr08:4358399..4358510 (25 bp)
AATTGGAGTCAAGCTCAGGGACCTT
LOC_Os08g07790
OsAffx.16884.1.S1_at--857--9611Chr08:4358504..4358524 (21 bp)
TCAGGGACCTTGTTCCTTGCATAAT
LOC_Os08g07790
OsAffx.16884.1.S1_at--965--6691Chr08:4358511..4358535 (25 bp)
GTTCCTTGCATAATTGTCTCTTTTG
LOC_Os08g07790
OsAffx.16884.1.S1_at--189--8191Chr08:4358577..4358601 (25 bp)
GGAACCATACAGGATAATACACAGA
LOC_Os08g07790
OsAffx.16884.1.S1_at--918--9431Chr08:4358774..4358798 (25 bp)
TCGGATATTCAGAACCCGCAGTTCA
LOC_Os08g07790
OsAffx.16884.1.S1_at--936--1791Chr08:4358787..4358811 (25 bp)
ACCCGCAGTTCATATAGTTCACAAA
LOC_Os08g07790
Target Sequence 
GTTCCTGTTTTGACGAAGCTAGCCAAGAATGGGTATTACGCTAGTCTTGTTCCAATGGTTCGGGATGCCTTTTTGACTGA
TGAGTTGGTCCGGATAGATTCTAAAGGATTGCCAAAAAGTGATTATCGGAAAATTGGAGTCAAGCTCAGGGACCTTGTTC
CTTGCATAATTGTCTCTTTTGACAAAGAGCAGATTATTGTTTGGAGGGGAAAGGATTATAATGGAACCATACAGGATAAT
ACACAGAAGACATCTGTTTCAGTTCTCGAAGAAGAGAGTGCAGGAGCTGAGAGCGAGAACGGTGATCAGGAACAAGCATC
AAGCGACTGGGCTTCTGATGAGTGCTCTCAGTTGAGTAGCTCTGATGAAATGCCAGATGACAAATCAGCTATTTCTGAGG
CAGACTCTGATTAGATCAATCGGATATTCAGAACCCGCAGTTCATATAGTTCACAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16884.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis