Browse Element(s) Details


Os.27849.1.S1_at

Description gb:AK072367.1
DB_XREF= gi:32982390
TID=Os.27849.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.27849 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023075K04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023075K04, full insert sequence.
FL= gb:AK119224.1 gb:AK072367.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0783011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g07774Os.51084.1.S1_x_at11/118+4346471..4355077NB-ARC domain containing protein, expressed
LOC_Os08g07790OsAffx.16884.1.S1_at11/118+4357055..4359160CRS2-associated factor 1, putative, expressed
LOC_Os08g07800OsAffx.5741.1.S1_at10/118+4359622..4360295hypothetical protein
LOC_Os08g07810OsAffx.29088.1.S1_at10/118+4364678..4366586Strictosidine synthase family protein
LOC_Os08g07820OsAffx.16885.1.S1_at11/118+4371841..4372919hypothetical protein
LOC_Os08g07830Os.27849.1.S1_at11/118+4379424..4382687expressed protein
LOC_Os08g07840Os.15037.1.S1_a_at11/118+4384706..4394413polI-like DNA polymerase, putative, expressed
LOC_Os08g07840Os.15037.1.S2_at11/118+4384706..4394413polI-like DNA polymerase, putative, expressed
LOC_Os08g07840Os.15037.2.S1_x_at10/118+4384706..4394413polI-like DNA polymerase, putative, expressed
LOC_Os08g07840Os.15037.2.S1_at9/118+4384706..4394413polI-like DNA polymerase, putative, expressed
LOC_Os08g07840Os.12123.1.S1_x_at2/118+4384706..4394413polI-like DNA polymerase, putative, expressed
LOC_Os08g07850Os.54720.1.S1_at11/118+4400776..4410901polI-like DNA polymerase, putative, expressed
LOC_Os08g07850Os.15037.1.S1_a_at11/118+4400776..4410901polI-like DNA polymerase, putative, expressed
LOC_Os08g07850Os.12123.1.S1_x_at7/118+4400776..4410901polI-like DNA polymerase, putative, expressed
LOC_Os08g07850Os.15037.2.S1_x_at6/118+4400776..4410901polI-like DNA polymerase, putative, expressed
LOC_Os08g07850OsAffx.661.1.S1_x_at1/118+4400776..4410901polI-like DNA polymerase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27849.1.S1_at--700--6391Chr08:4379823..4379847 (25 bp)
GATCACCAAGATTCCTTTTCCAGTG
LOC_Os08g07830
Os.27849.1.S1_at--483--2131Chr08:4379794..4379818 (25 bp)
ACAGGGTTATGTGCCTTCTCATTTG
LOC_Os08g07830
Os.27849.1.S1_at--733--8831Chr08:4379743..4379767 (25 bp)
TGATCCGTATTTCTCCTATCCCAAT
LOC_Os08g07830
Os.27849.1.S1_at--169--2551Chr08:4379690..4379714 (25 bp)
AACTCGGTGCGACTTAGTTCTTCAG
LOC_Os08g07830
Os.27849.1.S1_at--205--3831Chr08:4379650..4379674 (25 bp)
CTGCGATGTTGCATCTTCAGCCTTG
LOC_Os08g07830
Os.27849.1.S1_at--111--10511Chr08:4379624..4379648 (25 bp)
TTAATCTTGAATTTGGCTGTTGCCG
LOC_Os08g07830
Os.27849.1.S1_at--298--6691Chr08:4379606..4379630 (25 bp)
GTTGCCGGGATATTCTGTGTATGCT
LOC_Os08g07830
Os.27849.1.S1_at--272--8371Chr08:4379545..4379569 (25 bp)
GGCGTACTGCAGTTTTACTAGGTCA
LOC_Os08g07830
Os.27849.1.S1_at--1023--3691Chr08:4379528..4379552 (25 bp)
CTAGGTCACTGCATGGCTTGTTCAA
LOC_Os08g07830
Os.27849.1.S1_at--858--2292Chr08:4379489..4379513 (25 bp)
AAATGTGTGCTGCTTGTACCAAATT
LOC_Os08g07830
Os.27849.1.S1_at--714--8832Chr08:4379462..4379486 (25 bp)
TGATACATTTTACCACCTCCACAAG
LOC_Os08g07830
Target Sequence 
GATCACCAAGATTCCTTTTCCAGTGACACACAGGGTTATGTGCCTTCTCATTTGCCCCAGAGGTCGCCATNGATGGAGGA
TGATCCGTATTTCTCCTATCCCAATCTGTTCTCNTCAAAACCTTGAGGGTGGAAACTCGGTGCGACTTAGTTCTTCAGCA
TAGTTCNAAGTGCCTGCGATGTTGCATCTTCAGCCTTGTTTAATCTTGAATTTGGCTGTTGCCGGGATATTCTGTGTATG
CTGAGTTGATACTTAAAGGGGGGTACTGGCGGGGTACTGGCGTACTGCAGTTTTACTAGGTCACTGCATGGCTTGTTCAA
TGTCTGTAAATTGTAAATGTGTGCTGCTTGTACCAAATTTGTGATACATTTTACCACCTCCACAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27849.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis