Browse Element(s) Details


Os.12123.1.S1_x_at

Description gb:CB661247
DB_XREF= gi:29664972
DB_XREF=OSJNEd03N17.f
CLONE=OSJNEd03N17
TID=Os.12123.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.12123 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with moderate similarity to protein ref:NP_188690.1 (A.thaliana) DNA polymerase, putative (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g078507/11polI-like DNA polymerase, putative, expressed
LOC_Os08g078402/11polI-like DNA polymerase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g07830Os.27849.1.S1_at11/118+4379424..4382687expressed protein
LOC_Os08g07840Os.15037.1.S1_a_at11/118+4384706..4394413polI-like DNA polymerase, putative, expressed
LOC_Os08g07840Os.15037.1.S2_at11/118+4384706..4394413polI-like DNA polymerase, putative, expressed
LOC_Os08g07840Os.15037.2.S1_x_at10/118+4384706..4394413polI-like DNA polymerase, putative, expressed
LOC_Os08g07840Os.15037.2.S1_at9/118+4384706..4394413polI-like DNA polymerase, putative, expressed
LOC_Os08g07840Os.12123.1.S1_x_at2/118+4384706..4394413polI-like DNA polymerase, putative, expressed
LOC_Os08g07850Os.54720.1.S1_at11/118+4400776..4410901polI-like DNA polymerase, putative, expressed
LOC_Os08g07850Os.15037.1.S1_a_at11/118+4400776..4410901polI-like DNA polymerase, putative, expressed
LOC_Os08g07850Os.12123.1.S1_x_at7/118+4400776..4410901polI-like DNA polymerase, putative, expressed
LOC_Os08g07850Os.15037.2.S1_x_at6/118+4400776..4410901polI-like DNA polymerase, putative, expressed
LOC_Os08g07850OsAffx.661.1.S1_x_at1/118+4400776..4410901polI-like DNA polymerase, putative, expressed
LOC_Os08g07860OsAffx.32034.1.S1_at11/118+4415086..4416634hypothetical protein
LOC_Os08g07870NANA8+4418641..4423644retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g07880Os.52545.1.S1_at8/118+4424574..4427859DNA/pantothenate metabolism flavoprotein, expressed
LOC_Os08g07890Os.12668.1.S1_s_at11/118+4433837..4441289NB-ARC domain containing protein, expressed
LOC_Os08g07890Os.51084.1.S1_x_at2/118+4433837..4441289NB-ARC domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006260biological_processDNA replication
GO:0005739cellular_componentmitochondrion
GO:0009507cellular_componentchloroplast
GO:0003677molecular_functionDNA binding
GO:0003887molecular_functionDNA-directed DNA polymerase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12123.1.S1_x_at--790--10871Chr08:4401036..4401060 (25 bp)
TTGGCGAAGCAAAGATTTACATCAT
LOC_Os08g07850
Os.12123.1.S1_x_at--100--3551Chr08:4401017..4401041 (25 bp)
CATCATATTTAAGAGCTACGTTTTG
LOC_Os08g07850
Os.12123.1.S1_x_at--818--9931Chr08:4401001..4401025 (25 bp)
TACGTTTTGTGTTCTTTCAGAGTAT
LOC_Os08g07850
Os.12123.1.S1_x_at--352--171Chr08:4400973..4400997 (25 bp)
ATTTTGATCCCCAGAATGAATTTGT
LOC_Os08g07850
Os.12123.1.S1_x_at--684--5272Chr08:4400960..4400984 (25 bp)
GAATGAATTTGTACATTGTCCTCAA
LOC_Os08g07850
Os.12123.1.S1_x_at--192--32Chr08:4400946..4400970 (25 bp)
ATTGTCCTCAAATGTTATGTCTGCA
LOC_Os08g07850
Os.12123.1.S1_x_at--283--771Chr08:4400930..4400954 (25 bp)
ATGTCTGCATCTGCCAGGTGCATGA
LOC_Os08g07850
Os.12123.1.S1_x_at--234--9211Chr08:4400761..4400785 (25 bp)
TGCCAAGTAGAATCCACACTCAGTT
NONE
Os.12123.1.S1_x_at--523--5331Chr08:4400447..4400471 (25 bp)
GAAGTAGCCTGTCTGATAGTTAGAT
NONE
Os.12123.1.S1_x_at--1070--7931Chr08:4400420..4400444 (25 bp)
GGATTTGACTGTAGGGACCCCAGTA
NONE
Os.12123.1.S1_x_at--1137--9855Chr10:13198489..13198508 (20 bp)
TACTTGGGCAGTGTTTAGTTCCCTT
NONE
Target Sequence 
TTGGCGAAGCAAAGATTTACATCATATTTAAGAGCTACGTTTTGTGTTCTTTCAGAGTATTTTATTTTGATCCCCAGAAT
GAATTTGTACATTGTCCTCAAATGTTATGTCTGCATCTGCCAGGTGCATGATGAAGTGATCTTGGAAGGGCCTACAGAAT
CTGCCGAGGAGGCCAAGGCCATCGTTGTGGAGTGCATGTCCAAGCCTTTNTATGGAACCAACATCCTCAAGGTTGACCTA
GCTGTNGACGCCAAGTACGNGAAGAGCTGGTATGCTGCCAAGTAGAATCCACACTCAGTTNTTCTGCCCTATACATAGCC
AGATGAACACATTTGTCTGCCCCAAAGTTAGGCGACACCAAAGTTATGTGTCGCCGATGCGATGAAGACTCTTTCACTGG
CAGTAGCTGAATGTACAGAAGTAGCCTGTCTGATAGTTAGATTTGGATTTGACTGTAGGGACCCCAGTAGATACTGACCT
GTATGAGACTTTCAGATACTTGGGCAGTGTTTAGTTCCCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12123.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis