Browse Element(s) Details


Os.52545.1.S1_at

Description gb:AK067868.1
DB_XREF= gi:32977886
TID=Os.52545.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.52545 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013126N15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013126N15, full insert sequence.
FL= gb:AK067868.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g078808/11DNA/pantothenate metabolism flavoprotein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g07850Os.54720.1.S1_at11/118+4400776..4410901polI-like DNA polymerase, putative, expressed
LOC_Os08g07850Os.15037.1.S1_a_at11/118+4400776..4410901polI-like DNA polymerase, putative, expressed
LOC_Os08g07850Os.12123.1.S1_x_at7/118+4400776..4410901polI-like DNA polymerase, putative, expressed
LOC_Os08g07850Os.15037.2.S1_x_at6/118+4400776..4410901polI-like DNA polymerase, putative, expressed
LOC_Os08g07850OsAffx.661.1.S1_x_at1/118+4400776..4410901polI-like DNA polymerase, putative, expressed
LOC_Os08g07860OsAffx.32034.1.S1_at11/118+4415086..4416634hypothetical protein
LOC_Os08g07870NANA8+4418641..4423644retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g07880Os.52545.1.S1_at8/118+4424574..4427859DNA/pantothenate metabolism flavoprotein, expressed
LOC_Os08g07890Os.12668.1.S1_s_at11/118+4433837..4441289NB-ARC domain containing protein, expressed
LOC_Os08g07890Os.51084.1.S1_x_at2/118+4433837..4441289NB-ARC domain containing protein, expressed
LOC_Os08g07900NANA8+4448215..4453879retrotransposon protein, putative, LINE subclass

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Gene Ontology Classification
GO idTypeName
GO:0003824molecular_functioncatalytic activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52545.1.S1_at--120--7171NONE
GTCTCCTTCAGCATTTTGTGTATCC
NONE
Os.52545.1.S1_at--426--3651Chr08:4427330..4427349 (20 bp)
CTTCAAGCTTGAGACGGACCCAGAT
LOC_Os08g07880
Os.52545.1.S1_at--143--8111Chr08:4427340..4427364 (25 bp)
GGACCCAGATATCCTTCTGCAGAAG
LOC_Os08g07880
Os.52545.1.S1_at--728--5251Chr08:4427394..4427418 (25 bp)
GAATGTCGTGGTCGCCAACGAGCTA
LOC_Os08g07880
Os.52545.1.S1_at--245--6191Chr08:4427460..4427484 (25 bp)
GAGGACAACCGTGCGAAGGCCCAGC
LOC_Os08g07880
Os.52545.1.S1_at--913--5491Chr08:4427503..4427527 (25 bp)
GAACAGTTAATCGATCTCTTGGTAG
LOC_Os08g07880
Os.52545.1.S1_at--492--371NONE
ATCAAGACCATCAGACGTGCACAAG
NONE
Os.52545.1.S1_at--895--6631Chr08:4427640..4427664 (25 bp)
GTTGTTACAACTTACGAGCCACGAG
LOC_Os08g07880
Os.52545.1.S1_at--519--6911NONE
GTATGCATGTACCACATTCAGGTGT
NONE
Os.52545.1.S1_at--191--1051Chr08:4427751..4427775 (25 bp)
AGGTGTCAATGTTACGCCTGGTGCT
LOC_Os08g07880
Os.52545.1.S1_at--473--4471Chr08:4427766..4427790 (25 bp)
GCCTGGTGCTTCTGTAACTTACTAC
LOC_Os08g07880
Target Sequence 
GTCTCCTTCAGCATTTTGTGTATCCTTCAAGCTTGAGACGGACCCAGATATCCTTCTGCAGAAGGCAGAGGCAGCTCTGA
GAAAGTATGGTATGAATGTCGTGGTCGCCAACGAGCTAGCGAACTACAAAGATGTAGTTGTGATGGTCACAAGCAATGGG
AGGACAACCGTGCGAAGGCCCAGCAAGGAGGATGACGTCGAAGAACAGTTAATCGATCTCTTGGTAGAGATGCACTCTGA
ACACATCATGCAGCTCAATCAAGACCATCAGACGTGCACAAGCTGACATAACAATTATACTGAATGGAGTACGAGTATCA
GAATTCTTGGCAACTACATCATCCAAAGTTGTTACAACTTACGAGCCACGAGCTGAACTATGAATATCATGACTTGTAAA
AAAGAAAANGAATAGCATATGCCCACAAATGGTGGTAAAGTATGCATGTACCACATTCAGGTGTCAATGTTACGCCTGGT
GCTTCTGTAACTTACTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52545.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis