Browse Element(s) Details


Os.51084.1.S1_x_at

Description gb:AK071471.1
DB_XREF= gi:32981494
TID=Os.51084.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51084 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023095L06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023095L06, full insert sequence.
FL= gb:AK071471.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0777411/11NB-ARC domain containing protein, expressed
LOC_Os08g077603/11BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed
LOC_Os08g078902/11NB-ARC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g07730OsAffx.16883.1.S1_x_at11/118+4319543..4323424Transferase family protein, expressed
LOC_Os08g07730OsAffx.13115.1.S1_at2/118+4319543..4323424Transferase family protein, expressed
LOC_Os08g07730Os.46622.1.S1_x_at1/118+4319543..4323424Transferase family protein, expressed
LOC_Os08g07740Os.49771.1.S1_at9/118+4327373..4329090Histone-like transcription factor and archaeal histone family protein, expressed
LOC_Os08g07740OsAffx.23994.1.S1_x_at1/118+4327373..4329090Histone-like transcription factor and archaeal histone family protein, expressed
LOC_Os08g07760Os.49150.1.S1_at11/118+4337827..4344158BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed
LOC_Os08g07760Os.51084.1.S1_x_at3/118+4337827..4344158BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed
LOC_Os08g07760Os.12668.1.S1_s_at1/118+4337827..4344158BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed
LOC_Os08g07774Os.51084.1.S1_x_at11/118+4346471..4355077NB-ARC domain containing protein, expressed
LOC_Os08g07790OsAffx.16884.1.S1_at11/118+4357055..4359160CRS2-associated factor 1, putative, expressed
LOC_Os08g07800OsAffx.5741.1.S1_at10/118+4359622..4360295hypothetical protein
LOC_Os08g07810OsAffx.29088.1.S1_at10/118+4364678..4366586Strictosidine synthase family protein
LOC_Os08g07820OsAffx.16885.1.S1_at11/118+4371841..4372919hypothetical protein
LOC_Os08g07830Os.27849.1.S1_at11/118+4379424..4382687expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0006952biological_processdefense response
GO:0009626biological_processhypersensitive response
GO:0009742biological_processbrassinosteroid mediated signaling
GO:0009793biological_processembryonic development (sensu Magnoliophyta)
GO:0009814biological_processdefense response to pathogen, incompatible interaction
GO:0016049biological_processcell growth
GO:0005737cellular_componentcytoplasm
GO:0005768cellular_componentendosome
GO:0005886cellular_componentplasma membrane
GO:0019897cellular_componentextrinsic to plasma membrane
GO:0000166molecular_functionnucleotide binding
GO:0004672molecular_functionprotein kinase activity
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0004675molecular_functiontransmembrane receptor protein serine/threonine kinase activity
GO:0005515molecular_functionprotein binding
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51084.1.S1_x_at--833--7592Chr08:4438450..4438474 (25 bp)
GGGCATATCGCACCAGAATATCTTT
LOC_Os08g07890
Os.51084.1.S1_x_at--295--131Chr08:4354258..4354282 (25 bp)
ATTACAGGACAACGTGCCTTTGACC
LOC_Os08g07774
Os.51084.1.S1_x_at--222--10772Chr08:4354277..4354301 (25 bp)
TTGACCTTGCTCGTCTAGCCAATGA
LOC_Os08g07774
Os.51084.1.S1_x_at--52--691Chr08:4354304..4354328 (25 bp)
ATGACGTCATGCTACTGGACTGGGT
LOC_Os08g07774
Os.51084.1.S1_x_at--644--6953Chr08:4354675..4354699 (25 bp)
GTAGAATCACTAATCCAGGTTGCTC
LOC_Os08g07774
Os.51084.1.S1_x_at--345--1012Chr08:4354691..4354715 (25 bp)
AGGTTGCTCTTCTTTGCACACAAGG
LOC_Os08g07774
Os.51084.1.S1_x_at--517--6091Chr08:4354893..4354917 (25 bp)
GAGTCACTCACCTCTTGATGTAGCT
LOC_Os08g07774
Os.51084.1.S1_x_at--725--911Chr08:4354932..4354956 (25 bp)
AGGCTTTCTCCCTTTTGGGATGTAG
LOC_Os08g07774
Os.51084.1.S1_x_at--640--3231Chr08:4354957..4354981 (25 bp)
CAAGACTTTCTTCCGGTTGAGCCAA
LOC_Os08g07774
Os.51084.1.S1_x_at--119--8931Chr08:4354974..4354998 (25 bp)
TGAGCCAACGTCTCCTGATTTTGGG
LOC_Os08g07774
Os.51084.1.S1_x_at--1103--8791Chr08:4354989..4355013 (25 bp)
TGATTTTGGGCCCTCAGAGCTTGGC
LOC_Os08g07774
Target Sequence 
GGGCATATCGCACCAGAATATCTTTCAACTGGAATTATCTCTGAGAAAACTGATGTATTTGGTTATGGGATTATGCTTTT
GGAGCTTATTACAGGACAACGTGCCTTTGACCTTGCTCGTCTAGCCAATGATGATGACGTCATGCTACTGGACTGGGTAA
AAGGATTACTCAAGGAGAAACGGCTGGAGATGTTGGTTGATCCAGATCTACAGAGCAACTACATTGATGTTGAGGTAGAA
TCACTAATCCAGGTTGCTCTTCTTTGCACACAAGGCTCCCCCACAGAACGCCCTAAGATGGCGGAGGTGGTGAGGATGCT
TGAAGGTGATGGCCTTGCCGAGAGATGGGAGGAGTGGCAGAAGATAGAAGTAGTACGGCAGGAGGTAGAGCTTGTTGGGA
ATAGTCACACATTGTTTATTTAGAGAGAGTTGAACTAACTTAAAAGTGGGGGGAGTCACTCACCTCTTGATGTAGCTTTT
GGGGTGTAGCAAGGCTTTCTCCCTTTTGGGATGTAGCAAGACTTTCTTCCGGTTGAGCCAACGTCTCCTGATTTTGGGCC
CTCAGAGCTTGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51084.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis