Browse Element(s) Details

Os.12668.1.S1_s_at

Description

gb:C22605
DB_XREF= gi:2317551
DB_XREF=C22605
CLONE=R2976_3Z
TID=Os.12668.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.12668 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_174683.1 (A.thaliana) somatic embryogenesis receptor-like kinase, putative (Arabidopsis thaliana)
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os08g07890	11/11	NB-ARC domain containing protein, expressed
LOC_Os08g07760	1/11	BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os08g07850	Os.54720.1.S1_at	11/11	8	+	4400776..4410901	polI-like DNA polymerase, putative, expressed
LOC_Os08g07850	Os.15037.1.S1_a_at	11/11	8	+	4400776..4410901	polI-like DNA polymerase, putative, expressed
LOC_Os08g07850	Os.12123.1.S1_x_at	7/11	8	+	4400776..4410901	polI-like DNA polymerase, putative, expressed
LOC_Os08g07850	Os.15037.2.S1_x_at	6/11	8	+	4400776..4410901	polI-like DNA polymerase, putative, expressed
LOC_Os08g07850	OsAffx.661.1.S1_x_at	1/11	8	+	4400776..4410901	polI-like DNA polymerase, putative, expressed
LOC_Os08g07860	OsAffx.32034.1.S1_at	11/11	8	+	4415086..4416634	hypothetical protein
LOC_Os08g07870	NA	NA	8	+	4418641..4423644	retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g07880	Os.52545.1.S1_at	8/11	8	+	4424574..4427859	DNA/pantothenate metabolism flavoprotein, expressed
LOC_Os08g07890	Os.12668.1.S1_s_at	11/11	8	+	4433837..4441289	NB-ARC domain containing protein, expressed
LOC_Os08g07890	Os.51084.1.S1_x_at	2/11	8	+	4433837..4441289	NB-ARC domain containing protein, expressed
LOC_Os08g07900	NA	NA	8	+	4448215..4453879	retrotransposon protein, putative, LINE subclass
LOC_Os08g07910	OsAffx.29089.1.S1_at	11/11	8	+	4454275..4454777	expressed protein
LOC_Os08g07920	OsAffx.29090.1.S1_at	11/11	8	+	4455805..4457912	disease resistance protein RPM1 homolog, putative
LOC_Os08g07930	OsAffx.29091.1.S1_at	11/11	8	+	4459685..4465429	NB-ARC domain containing protein

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Gene Ontology Classification

GO id	Type	Name
GO:0006468	biological_process	protein amino acid phosphorylation
GO:0009742	biological_process	brassinosteroid mediated signaling
GO:0009793	biological_process	embryonic development (sensu Magnoliophyta)
GO:0016049	biological_process	cell growth
GO:0005768	cellular_component	endosome
GO:0005886	cellular_component	plasma membrane
GO:0004672	molecular_function	protein kinase activity
GO:0004674	molecular_function	protein serine/threonine kinase activity
GO:0004675	molecular_function	transmembrane receptor protein serine/threonine kinase activity
GO:0005515	molecular_function	protein binding
GO:0005524	molecular_function	ATP binding
GO:0016301	molecular_function	kinase activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.12668.1.S1_s_at--559--889	1	Chr08:4440826..4440850 (25 bp)	TGAGAACCTCCATGCGGTCGAGTTA	LOC_Os08g07890
Os.12668.1.S1_s_at--1001--351	1	Chr08:4440836..4440860 (25 bp)	CATGCGGTCGAGTTATCAGGGCCAA	LOC_Os08g07890
Os.12668.1.S1_s_at--95--177	1	Chr08:4440875..4440899 (25 bp)	ACCGGTAACTTTCTGCTGATTCTTG	LOC_Os08g07890
Os.12668.1.S1_s_at--1082--135	1	Chr08:4440909..4440933 (25 bp)	AGAGCAATTCGTACTGATCACCCTA	LOC_Os08g07890
Os.12668.1.S1_s_at--1019--35	1	Chr08:4440968..4440992 (25 bp)	ATAATGCTTTTTCTTGCTCGACGCA	LOC_Os08g07890
Os.12668.1.S1_s_at--151--569	1	Chr08:4441001..4441025 (25 bp)	GACATTGCCATATTGGTGCCACGGA	LOC_Os08g07890
Os.12668.1.S1_s_at--1050--815	1	Chr08:4441023..4441047 (25 bp)	GGAAACAGCACAACCCGAGGAACTA	LOC_Os08g07890
Os.12668.1.S1_s_at--939--1007	1	Chr08:4441046..4441070 (25 bp)	TAGTGTCCTGAGTGGTTGCTGCAAC	LOC_Os08g07890
Os.12668.1.S1_s_at--1136--1015	1	Chr08:4441117..4441141 (25 bp)	TATCATTTTTGCCTCCTTTGGGAAG	LOC_Os08g07890
Os.12668.1.S1_s_at--874--1029	1	Chr08:4441186..4441210 (25 bp)	TTTCGTTATGTCTGTGTTTCCTGTA	LOC_Os08g07890
Os.12668.1.S1_s_at--172--525	3	Chr08:4441231..4441255 (25 bp)	GAATCAAATGTACCTTCTGCACAGA	LOC_Os08g07890

Target Sequence

TGAGAACCTCCATGCGGTCGAGTTATCAGGGCCAAGGTGATGAATGCTCACCGGTAACTTTCTGCTGATTCTTGTACATC
GGAAGAGCAATTCGTACTGATCACCCTAGTCGAATCACCATCTGTTCATATTTGTTTGATGTATAATGCTTTTTCTTGCT
CGACGCACAACCATGGACATTGCCATATTGGTGCCACGGAAACAGCACAACCCGAGGAACTAGTGTCCTGAGTGGTTGCT
GCAACAATGTCCCAGTATGTTAAACCTACAATTTAGTAGGATGGAACTGGGTATCATTTTTGCCTCCTTTGGGAAGGCTT
CAGATGATGCAATTGCCCATGGTGTACTTTTATTTGGGCATTTCGTTATGTCTGTGTTTCCTGTAAAGGATATATACCTA
GTTCTGAATCAAATGTACCTTCTGCACAGA

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis